K14512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14512

Determination of introduced cDNA(s)

  • J033070J24 - Rice Full-length cDNAs - Original: J033070J24

    full reading [+] show sequence

    Nucleotide sequence: J033070J24 - full reading 
    GATCGAGGAC GTGCTGGGGC CGGCCGGGAT CGCCGGCGGC GGGGCGGCTC 
    CGGGGCTCCG TCTCCCGCTC GCCGCCGTCG CCGTGAAGCC CAAGCGTCCG 
    AGATCGCCAG GGTCGCGCAG ACCCGGCCGC AGCCCGAGGC CCGGATCCCC 
    GGGACGCAGA CGATATATGT GAAGACGTTC GGGTGCTCGC ATAACCAGAG 
    TGACAGTGAG TACATGTCAG GGCAGCTGTC AGCGTTTGGA TATGCGATCA 
    CTGAAGAGCC CGAAGGAGCG GATTTGTGGC TAATTAACAC ATGCACTGTG 
    AAAAACCCAA GTCAGTCTGC CATGACAACT CTCATATCGA AGTGCAAGAG 
    TGCAAACAAG CCTTTGGTTG TGGCTGGATG TGTACCACAA GGAAGCCGGG 
    ATCTGAAAGA GCTTGAAGGT ATTAGCGTTA TTGGAGTGCA ACAGATTGAC 
    CGCGTTGTTG AAGTTGTTGA AGAAACCTTA AAAGGCCATG AGGTTCGGTT 
    GTTGAGTCGG AAAACACTGC CCTCACTTGA TTTACCTAAG GTAAGGAAGA 
    ACAAATTTAT CGAGATTCTT CCTATTAATG TTGGGTGTTT GGGTGCTTGC 
    ACATACTGCA AGACAAAGCA TGCTCGTGGT CATCTTGGAA GCTATACTAT 
    AGAAAGTTTG GTAGATCGTG TGAAAATTGT TGTCTCTGAA GGTGTCCGAG 
    AAATATGGTT GAGTAGTGAG GATACTGGTG CTTATGGCAG GGATATCGGT 
    ACAAATCTTC CAAATCTATT AAATGGAATT GCTGCTGAGC TTCCTGCGGA 
    CAGAAGCACG ATGCTTCGCA TTGGCATGAC CAATCCTCCT TTCATATTGG 
    AGCATTTGAA GGAGATTGCT AGTGTTTTGT GCCATCCCTG TGTTTATTCT 
    TTCCTCCACG TTCCTGTACA ATCAGGAAGT GATGCAGTTT TAACGGCAAT 
    GAATCGTGAA TACACTGTGA GTGAATTCAG GAGGGTAGTT GACACTCTTT 
    GTGAGCTTGT CCCTGGAATG CAAATTGCTA CAGATATTAT TTGTGGATTC 
    CCCGGTGAGA CTGATGAGGA TTTCTCTCAA ACTGTTAACC TTGTAAAACA 
    ATATCTATTC CCTCAGGTTC ACATATCACA ATTCTACCCC AGACCAGGAA 
    CACCTGCTGC TAGGATGAAA AAGGTTCCAA GCGTTGAAGT GAAGAAAAGG 
    AGCCGTGAAT TGACCTCAGT TTTCGAGTCA TTTTCACCCT ACCAAGGAAT 
    GGAAGGCAAA GTAGAGAGGA TATGGATCAC TGAAATAGCT ACTGATGGTG 
    TTCATTTGGT TGGACATACC AAAGGATATA TCCAGGTGCT TGTCATTGCT 
    CCTGATAGCA TGTTAGGAAC ATCAGCAGAT GTGAAGATCA CATCTGTTGG 
    GAGATGGTCT GTGTTTGGTG AAGTGATAGA AGGATCCGTT GTAGCAAAGG 
    AAACACAGAA GCATAATCAC AGTGAACTGC AAGAAGAATA CAGGCCAAGT 
    CAGGTTGAGG AAGCCACTTG CTGCGGCACG GACTCTTGTG GTGCCTGCAC 
    ATGCTCTGAT GCAGCACAGC GATGCAATCC CGGTCCAGAG CGATCCGAAA 
    ATTCGACGCC CCAATCCTGT GGTGATGCTA CTCATCAGGA AGCTGTTCAG 
    TCTAAACTTG TGAGAAGAAA TGTTGAAGGA GCGGTGAAAA GTAGCGAAAG 
    TGATACAGCG AAACAGGTAG GGGAGATTCA GCGACTAAAT GTAGCAGCTA 
    GGAGGTTCCC AGATGTTGAT ACGATTCTGT GGGGTGGTTT GGCCGTGAGC 
    TTTGCCACGA CAGTAACCCT CATTGCACTG CTAGCTTACA AGATTTCTTC 
    CACGCCCTCC TACTAGTAAG TCTGGTGCAT GTGTAACTGT AGTTGAGCTG 
    TGTGTTACTG CTCAGTTTTG ACCATTTTTC TGTATCCATC CTCGATCCTT 
    CTGTTTGCCG C

    Gene models with high sequence identity

    1. AT1G72090.1 [+] show detail - Methylthiotransferase
      E-value: 0; Score: 766.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Methylthiotransferase 3.7e-111
    superfamily Radical SAM enzymes 7.1e-59
    HMMTigr Methylthiotransferase 1.4e-109
    HMMTigr MiaB-like tRNA modifying enzyme, archaeal-type 2e-166
    PatternScan Methylthiotransferase, conserved site 0
    HMMPfam Methylthiotransferase, N-terminal 3.8e-20
    HMMPfam Radical SAM 5.4e-19
    ProfileScan Deoxyribonuclease/rho motif-related TRAM 11.371
    ProfileScan Methylthiotransferase, N-terminal 28.657
    HMMSmart Elongator protein 3/MiaB/NifB 1.3e-39

    See the detailed result >

    AT1G72090.1

    Model type
    Protein coding
    Short Description
    Methylthiotransferase
    Computational Description
    Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR