K14513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14513

Determination of introduced cDNA(s)

  • J023134M13 - Rice Full-length cDNAs - Original: J023134M13

    full reading [+] show sequence

    Nucleotide sequence: J023134M13 - full reading 
    GGGCGCGTCG TCATCAACGA TTGCTAGATA GCCAAAGCTC TTTTGTTGTT 
    TCGGTGCTCT TCGGCTTCGT CGTCGGCGAG GGAGGGTTTG GTTTGGGAAG 
    TTGGGGGGGA TGGATCGGTC GATGGAGACG GTGGAGGAGG AGGTGGAGGA 
    GTACAGCTGG AGGGAGGTGC TGCTGCCGCG GCTCGTCCCG GTGGTGTCGG 
    ACGCGGCGCC GGAGCTGGAG CGGGAGACGG GGGAGCGCCG CCGGGGCAGG 
    GAGCTCCTCG TCGCCGTCGA CTTCGGGCCC AACTCCAAGC ACGCCTTCGA 
    CTGGGCGCTC GTGCACTTCG CCCGCATGGC CGACACGCTC CACCTCGTCC 
    ACGCCGTCTC CAGTTGAGCA CCCTCCCCAT CACCATCCCC ATCCCCGTCC 
    GTTCACCTCC GAACTTACCT AGCCTTGTGG AGCATATATG CATCTAGTAC 
    TTTAATTAGC TTCCGGAATT TTAAATCATA TACTAGGTTG ATGATTAAGT 
    AATTTATTGT AATTGCTCAA GCGAATTTAG CAACTTGATT TGTTTAGTGC 
    ACACAACCCA GTCGTCGTGT ATGGATTAAT TAATCAGAAG TATCTGCATC 
    TCATTTGTCA TTTGGCTGCT AGCTCACTGC ACCTTTTTTT TTTTTTCAGA 
    TTTGAATCAC CATACAAATA TACATAGAAT GTGATAGCAG CAGCCCAGGC 
    AGCGAGCCTA TATAATTTTC AGTAGGCTAG TTAATTGTGA TACTTGTAAC 
    CCTTTTTATC TTCTATCTTA ATAACATTCG GATTGGCCTT TCTTCGGTCA 
    TCCTAGCAAG ATACAATGCA GCATCACCGT GTTGTGTCAT TGTTTACTGT 
    TGGATGAACC TATATAGAGG CCTGACTTCC AGGAGGTCAA ATTTATGATG 
    GACTTAGAAG TGGACTTCCG TTTGATGATC TAGTTCATTA GAGAAGTGAA 
    AGCAGTACCC CCAGCTCAAC AGCTTAATGT CGATCTTGTA ACCGCTTTGT 
    AACCTCCTTT TCTTAATAAG ATTTGGTCAG CCTAATCCTT CGGCTGACCC 
    GTTAAAAAAG GTTAAAACAG TACTGTAGTT TGAGAGACTA AGGGAATAGT 
    AGCACTTGGG TATTGTAACT TTCTAAGTTT GAAGATTGTG GGTTGTTTTC 
    CTGGTGTATT ATCATAGAAC CAGTTCTATA ATCGAGGTAC ATCTGGTAAA 
    TTGTTTGAGA CC

    Gene models with high sequence identity

    1. AT2G21620.2 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 1e-11; Score: 67.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UspA 1e-05
    superfamily Adenine nucleotide alpha hydrolases-like 6.7e-06

    See the detailed result >

    AT2G21620.2

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Curator Summary
    Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.
    Computational Description
    RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1098 Blast hits to 1097 proteins in 198 species: Archae - 70; Bacteria - 241; Metazoa - 121; Fungi - 60; Plants - 588; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR