K14515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14515

Determination of introduced cDNA(s)

  • J023123J20 - Rice Full-length cDNAs - Original: J023123J20

    full reading [+] show sequence

    Nucleotide sequence: J023123J20 - full reading 
    GGCCATTCTC TAGGGTTTAT TCCACGCCTC CCGTCGCCGC CGCCGCCGCC 
    GTCGTTGTCC TCGCCCGCGC GCGAGGAGAA CGCTAAACTC CGGTCAAGAT 
    GGCGAGGGGT TTGAAGAAGC ATCTGAAGAG GCTCAATGCC CCCAGCCATT 
    GGATGTTTGA CAAGCTTGGT GGAGCATTTG CACCCAAGCC TTCTTCTGGT 
    CCCCACAAAG CTCGGGAGTG CTTGCCTTTG ATCCTTATCC TCAGGAACAG 
    GTTGAAGTAT GCTCTGACCT ACCGTGAGGT TATTTCCATC TTGATGCAGC 
    GGCATGTTAT GGTTGATGGA AAGGTCAGGA CTGACAAGAC TTATCCGGCT 
    GGATTCATGG ACGTTGTGTC AATTGCAAAG ACTGGGGAGA ATTTCCGCCT 
    TCTGTATGAC ACCAAGGGTC GCTTCCGTCT CCACAGCATC AAGGATGAGG 
    ACGCTAAGTT CAAGCTCTGC AAGGTCCGGT CTGTACAGTT TGGACAGAAG 
    GGTATTCCTT TCCTGAACAC CAACGACGGG CGCACGATCC GCTACCCAGA 
    CCCACTCATC AAGGCCAACG ACACCATCAA GATTGACTTG GAGACCAACA 
    AGATCGTGGA CTTCATCAAG TTTGATGTTG GAAACATCGT GATGGTGACC 
    GGTGGGAGGA ACACGGGGCG CGTCGGGGTG ATCAAGAGCA GGGAGAAGCA 
    CAAGGGCAGC TTTGAGACCA TCCATGTCGA GGATGCCCTC GGCCACCAGT 
    TCGCGACTCG CATGGGCAAC GTCTTCACCA TCGGCAAGGA GAGGAAGCCG 
    TGGGTATCTC TCCCCAAGGG CAAGGGCATC AAGCTCAGCA TCATTGAGGA 
    GGCGAGGAAG CGCAATGCCG AGGCTGCCGC TGAGGCTTGA TTTCTGAAAA 
    TCTCCATGAA TGAAACTGTT GATTTGAGCA GTCTATTTAT ATAGATTATT 
    TAGCTCTTAA GATCATATGT CCATTGGAGA CCGTCAATTG GCGCTTCATT 
    GTTCGATACT TGTCGAGCTG TTTTGAAACT ATGAATTCAT CATCTGTTAC 
    CTTCAGCATA ATAGATCCAG AATCCTTTTT TAGCTTGTGT AATCTTTCCC 
    AAATGAGAAG CTACCTTGCA TACTGAAATG AATTCCACAT GATGTTTGGA 
    TTTGCAAGTT CG

    Gene models with high sequence identity

    1. AT5G58420.1 [+] show detail - Ribosomal protein S4 (RPS4A) family protein
      E-value: 5e-121; Score: 431.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Ribosomal protein S4e, central 1e-48
    HMMPfam Ribosomal protein S4e, central 4.6e-32
    HMMPfam Ribosomal protein S4e, N-terminal 4.2e-19
    HMMPfam KOW 0.00000049
    HMMPfam RNA-binding S4 0.0000014
    ProfileScan RNA-binding S4 8.974
    HMMPIR Ribosomal protein S4e 8e-131
    HMMSmart RNA-binding S4 0.00048
    HMMSmart KOW 0.00068
    HMMPanther Ribosomal protein S4e 1.3e-190

    See the detailed result >

    AT5G58420.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S4 (RPS4A) family protein
    Computational Description
    Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR