K14524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14524

Determination of introduced cDNA(s)

  • J033133J15 - Rice Full-length cDNAs - Original: J033133J15

    full reading [+] show sequence

    Nucleotide sequence: J033133J15 - full reading 
    GGTATCGACG AAAGGCGTTT TCTCCGAGTC CTTAACAAAA CTTGATTACC 
    TTTCAATCAA TCATAGCTTC TTTTGGAGCT TACCACTCAC CACCATCGAT 
    CACCAGCTCC ACCATCATAA TCCACCCCTT TGAGACATAC ACCATGCTTA 
    CAAAGCTAAA ATTAAGTTAA GCAGCAGGCG ACCGTGCAAA GTCTAGTAAG 
    CCACCCAAAA GTGAGCAGCA GCAACCAACA ACTGAACCTA CCCTGCTCTG 
    CTCACACTGT CAGCCGATGC TGATCACCTC CTTCCAATCA ATCAACCTGC 
    CATTGCTGTA CATGAGCCAC ACCACCATCT GAGCTCATAT ATAAACCCCC 
    TCCCCACCCG CTGCCGCGAC CTCCTCCCAG CCATTTCGAT CGATCAAGGA 
    GAGCAAAGAG GGGATGTCGG TGATCAAGGA TTGTGGGGGG CACAAGGGGT 
    GCGAGTGCGA GAAGGAGAAG GTGCACCGGC GGCTGTGCTG GGCGCTGGTG 
    GCGCTGGTGC TCCTGACGCT CTTCATCGTG CTGGTGGTGT GGCTGGCGCT 
    GCGGCCGCAC AAGCCGCGGT TCTACCTGCA GGACCTGTCC GTGCTGTGCC 
    TCAACGTGAC GCCGCCGGCG TCCGCCTACC TCTTCACCAC CATGCAGGCG 
    ACGGTGGCGG CGCGCAACGA CAACGGCCGC GTGGGCGTCT ACTACGACAA 
    GGTGGACGTG TACGCGCAGT ACAAGGACGT GGCCATCACG GTGCCGACGA 
    GGCTCCCCGT GGAGTACCAG GGCCACTACG ACCAGTCCGT CTGGTCCCCC 
    TTCCTCCAAT CGCTCGACCA CGTCGTCCTC CCCCCCAACC TCGCCGTCGC 
    CCTCGCCCAG GACGAGACCG CCGGCTACGT CCTCGTCGAC ATCCGCCTCG 
    ACGGCTGGGT CCGATGGAAG GTCGGCACCT GGATCTCCGG CCACTACCAC 
    CTCCGCGTCA ACTGCCCCGC CCTCCTCACC GTCAACGACG GCAAGGGCAG 
    CTACGGCGTC AACTACGGCG GCGGCGATGG CTACTTCCGC TTCCAGCAAG 
    CAGCTGCATG CGCCGTCGAT GTCTAGCTGT GTCTTCTTTC TTCATTTCCT 
    CCTCCTCCTT CTCTTCTTCT TTTTAATTAG TTTCACGGCT TCTCTTCTTC 
    TTCTTGCTTA ATTTTTCTCA CCGGAATCAA TCATCTCATA TCAATGAAGA 
    AAAACCGATC GATGATAGTA CTAGCTTCTT AATTTAGACC GTAGTTGGTT 
    TGGAGCTAGT GTAGCTTGGA GTGAAAGGGA AAATTGGGGT ATTCTGAAAA 
    GATGCATAAT AGACGTACAG CTGGGAGTAG ACGTGAAGTG TCTGCATAAT 
    TCGATTTGCA TTTGGCAATA ATTATATTCC AATGTGAGTA CATCAATAAT 
    TAAAAAAAAT GTTCATATGT

    Gene models with high sequence identity

    1. AT3G44220.1 [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
      E-value: 6e-41; Score: 165.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G44220.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Computational Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT5G22200.1); Has 838 Blast hits to 838 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 838; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR