K14530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14530

Determination of introduced cDNA(s)

J013100G18 - Rice Full-length cDNAs - Original: J013100G18

full reading [+] show sequence

GATCTTATCC AGAACGCCGG AGACGCGAGC GCTGCGAGCA AGCGCAATGG 
AGGCGAAGCT GTCGGCGGCG TCGAGGCGGG TGGCGCCGTC GCCCATCCAG 
CAGCTCTCCC ACCTGGCGCA GCGCGCCGGC GCCGTCAACC TCGCCGAGGG 
CTTCCCCGAC TTCCCGGCCC CCGCCCACGT CAAGGCCGCC GCCGCCGCCG 
CCATCGCCGC CGACCTCAAC CAGTACAGGC ATGTGCAGGG GATCTGCGAC 
GCCCTCGCGG AGACGATGAA GCGGGACCAT GGCCTCCGCG TCGACCCTCT 
CACCGACTTC GCCGTTTGCT GCGGCCAGTC TGAGGCGTTT GCTGCAGCGA 
TATTTGCAAT AATTGACCAA GGGGATGAAG TTTTGCTCTT TGATCCAGCT 
TTTGAAACCT ATCAAACGTG CATTGAACTA GCCCGAGGTG TCCCTGTGTA 
TGTGCCGTTG GATCCACCTT CTTGGACTTT GAATGAAGAT AAATTTTTGA 
AATCATTTAC AAACCGGACA AAGGCAGTGG TCTTGAATAG CCCGCACAAT 
CCAACAGGAA AGGTTTTTAG CAGAGAGGAA TTGCTTATCA TTGCTCAAGC 
TTGTCAGAAA ATGGACTGCT TTGCAATAAC TGATGAGGTT TATGAGTACA 
TTACTTACGA TGAGAACAAG CATATCTCAT TGGCTTCGCT TCCAGGAATG 
CAAGAAAGGA CCATCATTAC TTCCTCACTG TCAAAAACTT ACAGCGTAAC 
TGGTTGGAGA ATTGGATGGG CTTGTGCTCC AGCTAATATC GCCTCAGCAA 
TAAGAAACAT CCATGTCAAG CTAACTGATT CAGCCCCTGC ACCATTCCAA 
GAAGCTGCGT TGGTTGCGTT AACAAGCCCA CCAGACTTCT ATTCATCCTT 
GAAACAGGAC TACACGGCGA GAAGAGACTT CATCCTTCAG GTGCTTACTG 
ATTTTGGCTT CCGCATTAGC TTCAAGCCCA CAAGGCTCGA TCTTTGTATT 
TGTTGAGCTT CCAAGGTCAT GGCAACTTTC AGATATGGAT TTCGTGACGA 
ACTTGATAAA AAATGCTGGT GTGGCGGCCG TGCCTGGTCG GGGATTCTTC 
CACTCAAGTA CCGACGACCC AAGCTACCAT CACCGGTATG TCAGGTTTGC 
GTTTTGCAAG AGCAATGACA CCCTAAACGC TGCTGCCGAG AAGATGAGGA 
AGCTAGCAGT CAGTCATGAT GCAAGGTTAT TGAGGCCTAC TGATGATGGA 
GAAGCAGGTC AGACTGCATC AGCCACCTCT CCTTGATCAC AGCCATAGTA 
TCTGCGTTCC AAATGTTATT TTGCTTTAAT TTTTGGGGAA CCATCAAGCA 
TTCAAGTTGC AGGGTAGAAG TTTGTTTTAA TCAACCGTAG TATAAGTAAA 
CATTTAAGTC AGAAGATGAC TGTCCTGGTA AGTGTTTAAG CCCAAATGGG 
TTGCCTTCAT TTTTTATGCA ATCCAAACAG TTCTTAAAAA TCTGAAAAAA 
AAATATATAT AGCACATAAT CTTGTCATCC

Gene models with high sequence identity

AT1G77670.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
E-value: 3e-61; Score: 43.10

InterPro Scan Digest

Program	Description	E-value
PatternScan	Aminotransferases, class-I, pyridoxal-phosphate-binding site	0
HMMPfam	Aminotransferase, class I/II	9.1e-45
FPrintScan	1-aminocyclopropane-1-carboxylate synthase	0.0001
FPrintScan	1-aminocyclopropane-1-carboxylate synthase	0.0001
HMMPanther	AMINOTRANSFERASE RELATED	2.7e-132
HMMPanther	SUBGROUP I AMINOTRANSFERASE RELATED	2.7e-132
HMMPanther	AMINOTRANSFERASE RELATED	2.8e-11
HMMPanther	SUBGROUP I AMINOTRANSFERASE RELATED	2.8e-11
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	3.9e-60
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	4.6e-09
superfamily	Pyridoxal phosphate-dependent transferase, major domain	2.5e-77
superfamily	Pyridoxal phosphate-dependent transferase, major domain	1.4e-10

See the detailed result >

AT1G77670.1

Model type: Protein coding
Short Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Computational Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.3); Has 49407 Blast hits to 49405 proteins in 3078 species: Archae - 1141; Bacteria - 34862; Metazoa - 771; Fungi - 871; Plants - 1354; Viruses - 0; Other Eukaryotes - 10408 (source: NCBI BLink).
Link: InterPro Scan - TAIR