K14530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14530

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14530

Determination of introduced cDNA(s)

  • J013100G18 - Rice Full-length cDNAs - Original: J013100G18

    full reading [+] show sequence

    Nucleotide sequence: J013100G18 - full reading
    GATCTTATCC AGAACGCCGG AGACGCGAGC GCTGCGAGCA AGCGCAATGG 
    AGGCGAAGCT GTCGGCGGCG TCGAGGCGGG TGGCGCCGTC GCCCATCCAG
    CAGCTCTCCC ACCTGGCGCA GCGCGCCGGC GCCGTCAACC TCGCCGAGGG
    CTTCCCCGAC TTCCCGGCCC CCGCCCACGT CAAGGCCGCC GCCGCCGCCG
    CCATCGCCGC CGACCTCAAC CAGTACAGGC ATGTGCAGGG GATCTGCGAC
    GCCCTCGCGG AGACGATGAA GCGGGACCAT GGCCTCCGCG TCGACCCTCT
    CACCGACTTC GCCGTTTGCT GCGGCCAGTC TGAGGCGTTT GCTGCAGCGA
    TATTTGCAAT AATTGACCAA GGGGATGAAG TTTTGCTCTT TGATCCAGCT
    TTTGAAACCT ATCAAACGTG CATTGAACTA GCCCGAGGTG TCCCTGTGTA
    TGTGCCGTTG GATCCACCTT CTTGGACTTT GAATGAAGAT AAATTTTTGA
    AATCATTTAC AAACCGGACA AAGGCAGTGG TCTTGAATAG CCCGCACAAT
    CCAACAGGAA AGGTTTTTAG CAGAGAGGAA TTGCTTATCA TTGCTCAAGC
    TTGTCAGAAA ATGGACTGCT TTGCAATAAC TGATGAGGTT TATGAGTACA
    TTACTTACGA TGAGAACAAG CATATCTCAT TGGCTTCGCT TCCAGGAATG
    CAAGAAAGGA CCATCATTAC TTCCTCACTG TCAAAAACTT ACAGCGTAAC
    TGGTTGGAGA ATTGGATGGG CTTGTGCTCC AGCTAATATC GCCTCAGCAA
    TAAGAAACAT CCATGTCAAG CTAACTGATT CAGCCCCTGC ACCATTCCAA
    GAAGCTGCGT TGGTTGCGTT AACAAGCCCA CCAGACTTCT ATTCATCCTT
    GAAACAGGAC TACACGGCGA GAAGAGACTT CATCCTTCAG GTGCTTACTG
    ATTTTGGCTT CCGCATTAGC TTCAAGCCCA CAAGGCTCGA TCTTTGTATT
    TGTTGAGCTT CCAAGGTCAT GGCAACTTTC AGATATGGAT TTCGTGACGA
    ACTTGATAAA AAATGCTGGT GTGGCGGCCG TGCCTGGTCG GGGATTCTTC
    CACTCAAGTA CCGACGACCC AAGCTACCAT CACCGGTATG TCAGGTTTGC
    GTTTTGCAAG AGCAATGACA CCCTAAACGC TGCTGCCGAG AAGATGAGGA
    AGCTAGCAGT CAGTCATGAT GCAAGGTTAT TGAGGCCTAC TGATGATGGA
    GAAGCAGGTC AGACTGCATC AGCCACCTCT CCTTGATCAC AGCCATAGTA
    TCTGCGTTCC AAATGTTATT TTGCTTTAAT TTTTGGGGAA CCATCAAGCA
    TTCAAGTTGC AGGGTAGAAG TTTGTTTTAA TCAACCGTAG TATAAGTAAA
    CATTTAAGTC AGAAGATGAC TGTCCTGGTA AGTGTTTAAG CCCAAATGGG
    TTGCCTTCAT TTTTTATGCA ATCCAAACAG TTCTTAAAAA TCTGAAAAAA
    AAATATATAT AGCACATAAT CTTGTCATCC

    Gene models with high sequence identity

    1. AT1G77670.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 3e-61; Score: 43.10

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    HMMPfam Aminotransferase, class I/II 9.1e-45
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.0001
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 0.0001
    HMMPanther AMINOTRANSFERASE RELATED 2.7e-132
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.7e-132
    HMMPanther AMINOTRANSFERASE RELATED 2.8e-11
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 2.8e-11
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.9e-60
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 4.6e-09
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.5e-77
    superfamily Pyridoxal phosphate-dependent transferase, major domain 1.4e-10

    See the detailed result >

    AT1G77670.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Computational Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase (TAIR:AT2G22250.3); Has 49407 Blast hits to 49405 proteins in 3078 species: Archae - 1141; Bacteria - 34862; Metazoa - 771; Fungi - 871; Plants - 1354; Viruses - 0; Other Eukaryotes - 10408 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR