K14532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14532

Determination of introduced cDNA(s)

  • J033028N18 - Rice Full-length cDNAs - Original: J033028N18

    full reading [+] show sequence

    Nucleotide sequence: J033028N18 - full reading 
    TGCGCAGGGC AAGGGAAGCA ACAATAACGT TAGGTTCGTG CAGCCGGACA 
    AGGTGGTGTT CCGGTCGCAG CCGATCCCTG GCGGCAAGCC GGCACGCCGC 
    GCGGCATCGA ACCGCGGCGG CCGGATGATG TCCCGGGACA GGCGCTACGA 
    CTCGTTCAAG ACGTGGTCCG GGAAGCTTGA GCGGCAGCTC ACCCATCTGG 
    CTGGCGCCGG GCCGGAGGTC CCCGAGGAGG AGGAGGACGG CTGCGACGGC 
    GACGCCATCA GCAGCCACCA CACCAAGTCC ATGCCTCAGG TTGATCGCTT 
    CTTCGCCGCA CTGGAGGGCC CCGAACTGGA CAAACTCCGG TCATCGGAGG 
    AGCTGGTGCT TCCGTCGGAC AAAACGTGGC CGTTCCTGCT CCGGTTCCCG 
    GTGTCGGCGT TCGGTATCTG CCTCGGCGTG AGCAGCCAGG CGATCCTGTG 
    GAAGACGGTG GCGACGTCAA CGCCGACGAG ATTCCTTCAC GTCACTACCA 
    AGGTGAACCT GGTGCTCTGG TGCGTTTCCC TCGCGCTCAT GTGCGTCATC 
    GCGGCCATCT ACGCTTGCAA GGTGGTCTTC TTCTTCGAGG CCGTCCGCCG 
    GGAGTATTAC CACCCGATCA GAGTCAACTT CTTCTTCGCG CCGTGGATTG 
    CCTGCCTCTT CCTCGCCATC GGCGTGCCGC CGTCCGTCGC GACGGAGCTG 
    CCACGCTGGC TCTGGTACGC GCTCATGACA CCTATCCTCT GCATGGAGCT 
    CAAGATCTAC GGGCAGTGGA TGTCCGGCGG GCAGCGGCGG CTGTCCAAGG 
    TGGCGAACCC GTCGAACCAC CTGTCGGTCG TCGGCAACTT CGTCGGCGCG 
    CTGCTCGGCG CGTCCATGGG TCTCAAGGAG GGGCCCGTCT TCTTCTTCTC 
    CGTTGGGCTG GCGCACTACA CCGTGCTGTT CGTGACGCTG TACCAGCGGC 
    TGCCGACGAA CGAGACGCTG CCCAAGGAGC TTCACCCGGT GTTCTTCCTG 
    TTCGTGGCGG CGCCGAGCGT GGCGTGCATG GCGTGGGCCA AGATCACCGG 
    CGAGTTCGGC CTCGGGTCAA GGGTCGCCTA CTTCATCGCC ATGTTCCTGT 
    ACGCGTCGCT CGCCGTCCGG ATCAACTTCT TCAGGGGGTT CAGGTTCTCG 
    CTGGCGTGGT GGGCGTACAC GTTCCCGATG ACCGGCGCCG CCATTGCGTC 
    CATCCGCTAC TCCACGGAGG TGGACAACGC CTTCACCAAG GCGCTCTGCG 
    TCGCGCTCTC CGTGCTGGCC ATGCTCACCG TGCTGGCGCT CCTGGCGACC 
    ACCATCGTGC ACGGCTTCGT GCTCCGCAAC CTCTTCCCCA ACGACATCTC 
    CATCGCCATC ACCGAGCGCA AGGTCAAACC CATCGTGGAG CTGCATGAGA 
    TGCTCGGCAG CAATGACAGC GCCGCCGGTC GTAGCAACGA CGACATCGAG 
    GCCGGTGTTG CGACAGTCGA ATCATCGTGA TCCGACTAAA AGCACACGCT 
    CAGTACAACA TGTACATGAA TCGAGGATGA CACGAGACAA CGCATGACTG 
    TTCTTGCTTG CCTCGTGGAC TTGCATTGAT CTGTGGCTTA GCATACGTGG 
    CATGCTCACT AGACACAAAG ATTGCCTCGT GGACTCCTGG TGTAAATCAA 
    GAAGAGGAAC CTTTAACTTT TCGATTAAGC TTGCGGCTAG ATGTTCTGTA 
    CATTTTTCAG ATAATGGATT ATAAGAACCT AGT

    Gene models with high sequence identity

    1. AT5G24030.1 [+] show detail - SLAC1 homologue 3
      E-value: 3e-160; Score: 562.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24030.1

    Model type
    Protein coding
    Short Description
    SLAC1 homologue 3
    Curator Summary
    Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.
    Computational Description
    SLAC1 homologue 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 2 (TAIR:AT4G27970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR