K14543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14543

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14543

Determination of introduced cDNA(s)

  • J013012O13 - Rice Full-length cDNAs - Original: J013012O13

    full reading [+] show sequence

    Nucleotide sequence: J013012O13 - full reading 
    GTATTTGACG CCATCTGCTC GTCTGCCTCC TCCCCGATTT CCTCTCCTCT 
    CTCTCTCTCC CTCTCTCCAT CCCTCCCGGC GTCCAATCTG TTCTGCTTCT 
    CGCTGCGCCC CCGGAATTGT GGTGAGGTTT TGTGAGGGTG TGGGGGAGGA 
    GGAGGATGGC GGAGGAGGTG TATGTCGCGT CGATCGACCA GGGCACGACG 
    AGCACGCGGT TCATCGTCTA CGACCGCCAC GCCAAGCCCG TCGCGTCGCA 
    TCAGCTCGAG TTCAAGCAGC ACTACCCGGA GGCTGGATGG GTTGAGCATG 
    ATCCTATGGA GATTATGGAG AGTGTGAAGA TATGCATGGC GAAGGCACTT 
    GGCAAAGCTG CAGCTGATGG TCATAATATG GATGTTGGAC TGAAGGCCAT 
    TGGTATTACA AATCAGAGGG AAACCACTGT TATGTGGAGC AAATCCACAG 
    GCCTTCCTCT ATACAATGCC ATTGTATGGA TGGATGCTCG CACAAGCCCC 
    ATTTGCAGGA GATTGGAAAG TGATCTTTCT GGTGGTAGAA CCCACTTTGT 
    CGAGACATGT GGATTGCCAA TCAGTACCTA TTTCAGTGCT TTGAAGGTGT 
    TATGGTTGAT CGAAAATGTG GATGCCGTCA AGAATGCAGT CCGAGCTGGT 
    GATGCCTTAT TTGGCACAAT TGACACCTGG TTAATCTGGA ACCTCACAGG 
    AGGCATTGGC GGGACAGATC GTGATGGAAA TAAAGTATTT GGGCACCATG 
    TCACAGACTG CTCCAATGCA TCTCGCACAA TGCTTATGAA CCTGAAGGCA 
    CTTGACTGGG ACAAACCAAC ACTTGAGACG TTAGGAATTC CTGCTGAGAT 
    ATTGCCCAAA ATTATCAGTA ACTCGGAGAG AATTGGTGTG GTTGCCAATG 
    GGTTTCCCTT GGCGGGCGTC CCTATTGCTG GGTGCCTAGG AGACCAGCAT 
    GCTGCAATGC TTGGGCAGCT GTGCCAGAAA GGTGAAGCCA AAAGCACCTA 
    CGGAACTGGT GCCTTCATTC TTCTCAACAC AGGGGAGGAG CCTACCCAAT 
    CCTCCCATGG TCTTCTTAGC ACGATTGCTT ATAAGCTTGG CCCAAGCGCA 
    CCCACTAATT ATGCTCTAGA AGGCTCCATC GCAATTGCTG GTGCCGCAGT 
    TCAGTGGTTG AGAGACAGCC TTGGAATCAT TAGCACAGCA GCTGATATTG 
    AAAAGTTGGC TGATACTGTG CAGGATTCAG GTGGAATATA CTTTGTTCCA 
    GCATTCAATG GGTTGTTTGC ACCATGGTGG AGGGATGATG CAAGAGGCAT 
    ATGTATAGGA ATCACACGGT TCACTAACAA GGGGCACATT GCTCGAGCAG 
    TGCTCGAGAG TATGTGCTTT CAGGTGAATG ATGTCCTCAG CTCCATGCAC 
    AAGGATGCTG GGGAGGCAGG AGAAGTGAAG AGTGCAGAAA GGGAGTTCCT 
    GCTGCGCGTT GATGGTGGTG CTACTGTCAA CAATCTTCTC ATGCGGATCC 
    AGGCTGATTT ATTGGGTAGC CCTGTTGTCA GACCTGCTGA CATCGAGACA 
    ACTGCCCTTG GAGCTGCGTA TGCAGCTGGA TTAGCTGTTG GAGTCTGGTC 
    GAAGGAACAA ATTTTCGCTG GTTTGCACAA GGAGAACACC AGAGTCTTCC 
    GCCCGAAATT GGATGAGGCC CACAGGAGGA AGAGAGCAGA CTCCTGGTAC 
    AAGGCCGTTT CAAGATCATT TGATTTGGCT GACCTTTCTC TTTAGAATGA 
    CGAGGGATTT GTGAATTACT TCTGGATTGT ATAAGGTGCT TAGCACTTGT 
    TATGTCCATG AATAAGTTGG TCAATGGAAC ATCCTTCAAA AGAATTAGTT 
    GATTCCCCAC GCTTTGCTGC TGGAATTATT AAGTAATTTT CAATATACTT 
    TTTTAACAAT TGAGATAGGA GTAAAAAGAA AAAATAATGA AATGTCAGTG 
    TTTATTCAGT ACTTATCCTG AAACAAACAA ATGATGCCTG CGCTTTAATG 
    TGGAACATGT TGATGAGTAT ATGTTAAATA TTATAAAAAT GATAGATAGA 
    TTTATTAAAA TATTGTAAAA ATGATGTAAG AGATGATTGG ATATGTTTGT 
    ATGTTGATTT GTAAAATTAA ATAGATTATA GATGATATTG C

    Gene models with high sequence identity

    1. AT1G80460.1 [+] show detail - Actin-like ATPase superfamily protein
      E-value: 0; Score: 785.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Carbohydrate kinase, FGGY, conserved site 0
    HMMPfam Carbohydrate kinase, FGGY, N-terminal 6.7e-67
    HMMPfam Carbohydrate kinase, FGGY, C-terminal 3.3e-58
    superfamily Actin-like ATPase domain 6.2e-78
    superfamily Actin-like ATPase domain 3.1e-70
    HMMTigr Glycerol kinase 0
    HMMPanther Glycerol kinase 5.6e-220
    HMMPanther Carbohydrate kinase, FGGY 5.6e-220

    See the detailed result >

    AT1G80460.1

    Model type
    Protein coding
    Short Description
    Actin-like ATPase superfamily protein
    Curator Summary
    Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1.
    Computational Description
    nonhost resistance to P. s. phaseolicola 1 (NHO1); CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY, conserved site (InterPro:IPR018483), Glycerol kinase (InterPro:IPR005999), Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485); Has 17039 Blast hits to 17024 proteins in 2439 species: Archae - 160; Bacteria - 12245; Metazoa - 663; Fungi - 209; Plants - 115; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR