K14545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14545

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14545

Determination of introduced cDNA(s)

  • J033057M08 - Rice Full-length cDNAs - Original: J033057M08

    full reading [+] show sequence

    Nucleotide sequence: J033057M08 - full reading 
    GGTTCTTCCC CGATTCCCAA TCTCGCTCTC AAGTCGCAGC AGCACTCAGC 
    ATCGCGGCGG CCGGGGCCCG GGGCAACGGC GACGAGGCGG CGCGCCGGCA 
    GCGCGGGCGC ATCGGCTCCA AGCAGATACT CAAATATTCC CTGTTAACTA 
    GAGTATCTTC CCCTTCCCTT GGCGTAAAAG AAAAAAAATC TCCCGTCTCG 
    TCTCCTCCGC TCCTTGCGCC ATCTCGCTGC TGAACAGGGG AGGGGCGCCG 
    ATCTCCATCC GGCGAGCAGA GCAGGGGAGG GGGAGGGGAG GGGATCCTGA 
    GCCTTGACAT GGCAGAGAAA TTGGGACCTG AGAAGCGGCA CGCCTTCGTC 
    CACAACGGGC AGAAGGTCTT TGAGTGGGAC CAAACACTGG AGGAAGTGAA 
    CATGTACATT GAGCTCCCCA AGGGTGTGCC CACCAAGCTC TTTCACTGCG 
    CCATCCAGGC CACTCATGTT GAGGTCGGCA TCCGCGGCAA TCCACCCTAC 
    CTCAACCATG ACCTGACACT CCCAGTGAAG ACTGATTCAT CATTCTGGAC 
    AATAGAGGAT GGTGAAATGC ACATCACACT GCAAAAAAGA GAGAAGGGGA 
    AAACATGGTC ATCTCCAATA CAAGGCCAAG GTAGCTTAGA TCCATATGCT 
    GCAGACCAAG AACAAAAACG GCTTATGCTG CAAAGGTTTC AAGAAGAGAA 
    TCCAGGATTC GACTTCTCCC AGGCTCAGTT CACCGGAACC TGCCCTGACC 
    CAAGAACCTT CATGGGTGGA ATTCGCTCTG ACTGAAGCTT GGCCCAACGT 
    CATGTATCTG GCTAAATGAT GTTGCTAACC TCACAGTGGC TTGTCAAATA 
    ATCAAATGTG GTGGCTGTAC ATATCTCGCA TCTGTAAATT GTGAAATTCG 
    CCGGTTTCCT ATGGCTGCCT TTGTGCCTTA GAAATAATGG TGAATGTTTG 
    GCCTATCAAT CGCCGAGCCA GACGTAGGAT TCTGAAGTTA TTTATTCACT 
    TATTGATCTA GCATCCTTGA TGATGTAGTA AGTTTGTGAT CACCAGGTAC 
    TTGTGACTGT TCGAATGAAA ATATACCATC TACCCATGCC GGGTCATTTC

    Gene models with high sequence identity

    1. AT5G58740.1 [+] show detail - HSP20-like chaperones superfamily protein
      E-value: 1e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HSP20-like chaperone 3.3e-11
    Gene3D no description 3.3e-25
    HMMPanther NUCLEAR MOVEMENT PROTEIN RELATED 1e-75
    HMMPanther NUCLEAR MOVEMENT PROTEIN NUDC 1e-75
    ProfileScan CS-like domain 15.372
    HMMPfam CS domain 5.8e-18

    See the detailed result >

    AT5G58740.1

    Model type
    Protein coding
    Short Description
    HSP20-like chaperones superfamily protein
    Computational Description
    HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR