K14605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14605

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14605

Determination of introduced cDNA(s)

  • J023092H24 - Rice Full-length cDNAs - Original: J023092H24

    full reading [+] show sequence

    Nucleotide sequence: J023092H24 - full reading 
    GGCTTCCCCC TCCCCTCCTC TCGCTCTCGC TTGCGGCCGC GCGCGCGGGC 
    CCCCGGTGGT GCGAGCAGTC GTCGTCGTCG TCGTCATCGT CTTCGTCCGG 
    GGCCAGGTGG TCGGGGGGCG AGGCGATGGC GTACAGGGCG GAGGACGACT 
    ACGACTACCT GTTCAAGGTG GTGCTCATCG GCGACTCCGG GGTCGGCAAA 
    TCCAACCTCC TCTCCCGCTT CACCCGCAAC GAGTTCAGCC TCGAGTCCAA 
    GTCCACCATC GGCGTCGAGT TCGCCACCAG GAGCATCCGC GTCGACGACA 
    AGGTCGTCAA GGCCCAGATC TGGGACACCG CCGGCCAGGA GAGGTATCGG 
    GCGATTACAA GTGCATACTA TCGAGGGGCA GTTGGCGCAC TTGTCGTGTA 
    CGACGTGACA CGCCATGTCA CCTTTGAGAA TGTAGAGAGG TGGTTGAAGG 
    AGCTCCGGGA TCACACAGAT GCAAACATCG TCATCATGCT TGTTGGCAAC 
    AAGGCTGATC TGCGTCACCT TAGGGCCGTA TCGGTTGAGG ACGCCAAGGG 
    CTTCGCCGAG AGGGAAAGCA CATTCTTCAT GGAAACGTCC GCGTTGGAGT 
    CCATGAATGT AGAAAGTGCC TTCACTGAGG TGCTAACTCA GATCTATCGC 
    GTGGTCAGCA AGAAGGCCCT CGACATCGGC GATGACCCTG CTGCTCCACC 
    AAGAGGACAG ACCATCAATG TTGGTGGCAA AGATGATGTT TCTGCTGTGA 
    AAAAGTCTGG ATGCTGTTCA TCCTAAATCC ATTATGTCCA TGAGAAGGAA 
    CCATATGCTC ACCTGATTAT ATCATGAGTA ATTAAAAGGA TAACTTTCTT 
    TTGCTGCCTA ACCTGGTTGC CTGTGAGATT TTAGTGTTAC ATCAAGAAGG 
    TTGGGGCTGT TAAACCCAGG TTGGGAAAAA GCTAACTTTG AAGTGTCAGT 
    GGTTTTATGG TTTGCATTTG TGGTTTCTTC ATTGGTGTAC TATTGTTCCA 
    TGTAAATTGA CAGGATTTGA GATCCTCCCC ACCTTTCACT GCATAACATA 
    TCCCAGTAAA ATGTTGTTGT AATTGGATAT CAGACTGTAG CTGATTGGCA 
    GCAAGGGTTC TAATTAGAAG GGCTATTATA TTCTGTAACT CCTACTCACA 
    AATGTACAAA AGTTTGCATC CTTGAACTTC TTACCAGCCT GTATATTACG

    Gene models with high sequence identity

    1. AT5G60860.1 [+] show detail - RAB GTPase homolog A1F
      E-value: 2e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Ras GTPase 2.7e-42
    FPrintScan Ras GTPase 2.7e-42
    FPrintScan Ras GTPase 2.7e-42
    FPrintScan Ras GTPase 2.7e-42
    FPrintScan Ras GTPase 2.7e-42
    HMMTigr Small GTP-binding protein 4.7e-40
    HMMPanther Rab11-related 8.8e-95
    HMMPanther RAS-RELATED GTPASE 8.8e-95
    superfamily P-loop containing nucleoside triphosphate hyd 1e-62
    HMMSmart ADP-ribosylation factor 0.0045
    HMMSmart Ras small GTPase, Ras type 1.6e-26
    HMMSmart Ras small GTPase, Rab type 5.5e-111
    HMMSmart Small GTPase, Rho type 2.9e-12
    HMMSmart Ran GTPase 1.3e-07
    HMMPfam Ras 1.7e-61
    ProfileScan Small GTPase 35.393
    Gene3D no description 1.1e-64

    See the detailed result >

    AT5G60860.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A1F
    Computational Description
    RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR