K14615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14615

Determination of introduced cDNA(s)

J033095I16 - Rice Full-length cDNAs - Original: J033095I16

full reading [+] show sequence

GAGTGAGCCA CAGCACCGCC GGCAGTGACC AACAGCAACC AATCAGCAAA 
TCAGCAATGG AGAGGGCTCT GATGAGCCTC ATGAGGCGGC GCTCCCTCCT 
CCAGAGCGGC GGACGAGCAC CGCCGGCGAT GGCCGCCGCC GCCGGTGGCT 
CACCATTCTT CTCCACCCTG CAGCAAGCAG CCGCCGCAGA CCCGGTCCAG 
TCGCCTGGCA TCTTGCCAGG GCTCAAGATC AGGGACTCTG CGTCACAGCT 
GATTGGGAGG ACACCCATGG TTTACCTGAA CAAGGTCACT GAAGGATGTG 
GGGCCCGGAT TGCTGCTAAG CTCGAGTTCT TGCAGCCGTC CTTCAGCGTC 
AAGGACAGAC CAGCAATTTC AATGTTGGAA GATGCTGAAA AGAAGGGGTT 
GATCACCCCA GGTAAGACCA CACTGATCGA GCCGACATCA GGGAACATGG 
GTATTGGCCT GGCATTCATG GCTGCTCTTA AAGGGTATGA ACTCATACTC 
ACAATGCCTT CATACACCAG CCTTGAGAGG AGGGTGACCA TGAGGGCCTT 
CGGCGCAAAA CTCGTCCTTA CCGACCCAAC AAAAGGTATG GGAGGCACGG 
TGAGGAAGGC CGCCGAGCTG TATGAGAACC ATCCTAGCGC GTTCATGCTG 
CAGCAGTTTG AGAATCCTGC AAATGTCAAG GTACACTATG AGACAACTGG 
TCCAGAAATC TGGGAGGATA CACTTGGGCA GGTTGATATT TTTGTCATGG 
GAATCGGGAG CGGCGGCACC GTCACTGGTG TTGGCAAGTA TCTTAAGGAG 
AAGAACCCCA ATGCAAAGAT CTATGGAGTT GAACCTGCTG AAGCAAATGT 
TTTGAATGGT GGCAAACCAG GTCCTCACCT CATCACTGGA AATGGAGTGG 
GATTTAAGCC GGAAATTTTG AATATGGATA TAATGGAAAA GGTTATTGAG 
GTGAAAGGTG AGGATGCTGT TAAGATGGCT CGAGAATTGG CACTGAAGGA 
GGGTCTTCTG GTTGGAATAT CATCAGGAGC TAACACAGTT GCTGCTCTTG 
AACTAGCAAA GAAGCCAGAA AACAAAGGGA AGCTCATTGT GACTGTTCTT 
CCGAGTTTAG GGGAGAGATA CCTGTCATCT GCATTGTTTG AGGAATTGAG 
AGCGGAGGCT GAGGCCATGC AGCCAGTGCC AGTGGACTAA CTTGGATAAT 
CAACCTAGGC ATTGAGTATT TGATGAACGA AATTGCTATA CTCTAAATAA 
ATTTTCAATT TGTACTTTAA TTCCCCATTA CAAATTATGT ATCTTCAGAT 
TGTCTGTCAC TGAACTATAT AGATGGACTC TCTCTATGTA ATTCCACATT 
TATCAGAATA ACCTATGATC TCCCTCTCCT TTCTTTTTAA GTTCGGGTTT 
CTATTTTCCA ATTTTAATGG AACAGGTTAA AAATGC

Gene models with high sequence identity

AT3G61440.1 [+] show detail - cysteine synthase C1
E-value: 2e-128; Score: 456.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	0
HMMTigr	Cysteine synthase K/M	3.3e-175
HMMTigr	Cysteine synthase A	5.3e-177
HMMPfam	Pyridoxal phosphate-dependent enzyme, beta subunit	1.8e-58
HMMPanther	CYSTEINE SYNTHASE	3.4e-137
HMMPanther	SER/THR DEHYDRATASE, TRP SYNTHASE	3.4e-137
superfamily	Pyridoxal phosphate-dependent enzyme, beta subunit	6.8e-92
Gene3D	no description	5.4e-64

See the detailed result >

AT3G61440.1

Model type: Protein coding
Short Description: cysteine synthase C1
Curator Summary: Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway.
Computational Description: cysteine synthase C1 (CYSC1); FUNCTIONS IN: cysteine synthase activity, copper ion binding, L-3-cyanoalanine synthase activity; INVOLVED IN: cysteine biosynthetic process, detoxification of nitrogen compound, cyanide metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase isoform C (TAIR:AT3G59760.3); Has 22016 Blast hits to 21996 proteins in 2681 species: Archae - 390; Bacteria - 15417; Metazoa - 417; Fungi - 652; Plants - 575; Viruses - 2; Other Eukaryotes - 4563 (source: NCBI BLink).
Link: InterPro Scan - TAIR