K14622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14622

Determination of introduced cDNA(s)

J023034M14 - Rice Full-length cDNAs - Original: J023034M14

full reading [+] show sequence

GATCCATCCA TCGCCTCCTC TTTCCCTCCC ACCTCCACAC GTCCCCTCCT 
CTTCCCCAAT ATTCCACGCC ACCGCCGCCG TCAACCTCCG CCATCAGCAG 
CAGCAGCAGC GGTCTCCCAT TCCCATTCTT TGCTCCCACG CGAGGCTGCG 
CGGAGAACAG CTGCACAGGT GGGGTGGGGG TGCAGACCGA GCTGAGGAGT 
AGCCGGAGTT GGTGGTGAGA GACGCGGGTG GGGCGCGGCC ATGGCGGGGA 
GGGTGGTGCG GAGCTGCGTG CAGACGGGGC TCAAGGCGGT GAACTCCGTG 
CTGGGGCTCG CCGGGATGGC CGTCATCCTC TACGCGCTCT GGATGCTCCG 
CGCATGGTAC AGGGACGTCG CCGACCTCCA CTACCGCCTC CCGGTCCCAT 
GGTTTATCTA CACTTTTATT GGCCTGGGAG TCTTTATGTG CTTGTTGACT 
TGCTCTGGTC ATATTGCAGC TGAAACTGCA AACAGCCACT GTCTCTCTTG 
TTACATGATT TTTGTGTTTA TTATTATTAT ATTGGAAGGA GCAATCACCA 
CTGACGTATT TCTGAATAGC AACTGGGAGG AGGATTTCCC TGATGACCCA 
TCTGGAAAGT TTGAAGAATT CAAGGATTTT ATAAGATCAA ATTTTGAGAT 
TTGTGAATGG ATAGGCCTCT CGGTTGTCGC TGCCCAGGTG TTGTCAATCG 
TTCTTGGAAT GGTACTTAGG GCTCTTGGAC CTGACCGTGA AAGTGACTAT 
GATAGCGACG ACGACCCCTC TGTGCCTGCA AGGCTGCCTT TACTAAGAAA 
CCAGTACCAA CATGGCATAA ACTATTCTGA ACATACCTTA CCTCAAAGTA 
GTGATTCATG GAGTTTGCGG ATTTTAGATA AGGCTAACAA ATGAAAATTT 
TCTGACGATG AACCTTTGGA TGGAGCTATC ACCATGCTTC GGCCTGAAGG 
TTTAGCTCGA CATGAGGAAA TGATACCCTT CTTTTTTTTT TTCTAGGTAG 
CAATATTGAA TGGCTTCTTT TGATTGCCTA AACATGCACA ACTATTTGAG 
TAGCATGCAA CTGACCCTTA CAGCCCCTTG ATGTTATGGG AAGAATGTTG 
TATTTTACAG TGCTTCAGAA ACAGATGATG GCGTGATTCC GTCACTGACA 
AAAACACAGT TGAATGTTTT GTAGTCCGTC GAGCTGTCTG ATCC

Gene models with high sequence identity

AT2G20740.1 [+] show detail - Tetraspanin family protein
E-value: 5e-52; Score: 202.00

InterPro Scan Digest

See the detailed result >

AT2G20740.1

Model type: Protein coding
Short Description: Tetraspanin family protein
Computational Description: Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR