K14641

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14641

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14641

Determination of introduced cDNA(s)

  • J033147J02 - Rice Full-length cDNAs - Original: J033147J02

    full reading [+] show sequence

    Nucleotide sequence: J033147J02 - full reading 
    GCCATATATA TTTTGCTCAA GGTTTTTTTC AGCAAGCTGT GAAAATGTAC 
    CAAAACTGCC TGCGGAAGTT CTTCTACAAC ACAGATGCAA CTATACTTCT 
    ATATCTTGCC CGGACACACT ATGAAGCTGA ACAATGGCAA GACTGCAGGA 
    AAACATTGCT GAGAGCTATT CATTTGGCTC CATCAAATTA TTTATTGCGA 
    TTCAATGTAG GTGTTTCGAT GCAGAAATTC TCAGCTTCAA CTCTACAGAA 
    GACAAAACGA ACAGTTGATG AAGTCAGTAC TGCTGCTTTC CTATAGTTGG 
    TCTCTGTTTA TTTGATTTTT GAAATAAATA ACTAAACTGG CAAAAACTCA 
    TCAAATTGAC CTTTATGTTA TTTTAGGTAA AATGAATTGG GGAATCTTCA 
    GCCATAGTTA CTTATATATC TGAATTGATT GTGTTTAGAG ATGAGATTAT 
    GAATTAGAGT TGTAATATAG AAAGAAATGA GTACTTGTCA TTCTGATTGA 
    TATTTGAAAA ATGTATCATC TTATATATTT ACTTTGAAAA CCTTATCTGT 
    TTAATCTTTT TTCTCTATTT CCAGGTTCGT GCGACGGTCT CTGAGCTTCA 
    GAATGCTATT AGAGTATTCA GTCTATTGTC TGTTGCATCT ACATACCATT 
    CCCATGGTTT TGATGAGAGA AAAATAGAAA CTCATATTGA GTACTGCAAA 
    CATTTGCTTG ATGCTGCTAA GGTTCATCGT GATGCAGCTG AGCAGGCTGA 
    GCAGCAGAAT AAGCAAAAAA TGGAAGTTGC TCGACAAATT GCTTTGGCTG 
    ATGAAGCTCG CCGCAAGGCT GAAGAACAGA GGAAGGCCCA GTTAGAAAGA 
    AGGAAGCAAG AGGACGAGCT AAAGCAAGTA ATGCAACAGG AGCAACACTT 
    TGAGCGTGTC AAGGAGCAAT GGAAAACCTC AAGTAACACT CCTGGCAAGA 
    GAAAAGATAG GTCTAAGCAT GAAGATGAAG AGGGGGGAGG TGAAAAGAGG 
    AGGAAGAAGG GTGGTAGGAG AAGGAAGGAT CAGAAGACAA AGGCACACTA 
    TGGGGAAGAG GAAGAAGACG AATATAGAGA TGAACCAGAA GCAGAAGATG 
    ATTATGCAAA CACGGCGAGG AGTAACGATG GTGGCGATTC AGAGAAAGCC 
    CCAGGTCACC TTCTTGCTGC TGCAGGTCTT GAAGATTCTG ATGCTGAAGA 
    AGATGACATG GGACACCCTC AATCTGCCAT AGAACGGAAG AGACGAGCCT 
    GGTCAGAATC TGAGGATGAT GAGCCAGTGC AGAGGCCAGT GCAACCTAGC 
    GCAGGCGAGA ACGATCTGAG TGATTGAATT AGACGGTGAA GATTATGGCC 
    GAATTTGGGA TCACTTCATA TATTTGTGAC GAAGAATGGC TCCTGGGATG 
    CGGAATCAAC TATAGGGCGT GCTCATATGC ACTTGTGGAT AATTCGATGT 
    TGAAATGGAG CTCAGACAGA TGGTTGAACC AGAAGTGTTA AAAAAATTTA 
    TCTGGGAGCA GAGCAGTCAC TGATATTCAA CAATTAATCT CGCGTCATTC 
    TAGACATGCC ATGGGTTGGT GGAGCTAACA TAAGGCAATT TGTAATTTAT 
    GTCTAGTTTA CGCTTAATCA GCCAGACTTT TGTCCTGTGA GCTTCTAACG 
    CTGTACCAAT TTTAGCTCAC TTACATCTCA GGATAGCTGA TCTCCTACTT 
    TGTTCTTTGC TGCTAGGCAA GCGTGCCAAG AAAAGATTTC CAAAAGTAGC 
    TGATCTCCTA CTTTGCACCT AATTTTTCAG ACACTTCGGT TTGGCAGGCA 
    ACTGTACGTG CTCATTGGCA TTCGCTAATA TCGCCCTGCT CTCGTCCAAA 
    CAAAGTAATG GATATATAGA TCTAAAGTAA CGGATTTTTT C

    Gene models with high sequence identity

    1. AT2G06210.1 [+] show detail - binding
      E-value: 8e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetratricopeptide-like helical 0.00014
    superfamily TPR-like 2.8e-08
    ProfileScan Tetratricopeptide repeat-containing 9.766
    Coil coiled-coil 0
    HMMPanther TPR REPEAT NUCLEAR PHOSPHOPROTEIN 5.2e-37
    HMMPanther TPR REPEAT NUCLEAR PHOSPHOPROTEIN/CTR9 5.2e-37

    See the detailed result >

    AT2G06210.1

    Model type
    Protein coding
    Short Description
    binding
    Curator Summary
    Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
    Computational Description
    EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, histone methylation, negative regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035 proteins in 1980 species: Archae - 1189; Bacteria - 13149; Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses - 192; Other Eukaryotes - 11825 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR