K14645

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14645

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14645

Determination of introduced cDNA(s)

  • J013043M02 - Rice Full-length cDNAs - Original: J013043M02

    full reading [+] show sequence

    Nucleotide sequence: J013043M02 - full reading 
    TTGATCTCCC AAAGAAGCAT GGTAGAGGAG GACAATCTGC TTTGCGTTTT 
    GCTCGTCTTC GGATGGAGAA ACGCCATAAT TATGTCCGGA AAACAGCTGA 
    GCTTGCTACT CAGTTCTTCA TTAATCCTGC TACAAGTCAG CCTAATGTTT 
    CAGGCCTAAT CCTCGCTGGT TCTGCTGATT TTAAGACAGA ATTGAGTCAG 
    TCTGACATGT TTGATCAACG ACTTCAAGCC AAGATACTTA ATGTGGTTGA 
    TGTTTCTTAT GGTGGCGAGA ATGGTTTCAA CCAAGCTATT GAATTGTCAG 
    CTGAGATTCT AGCAAATGTC AAGTTCATAC AGGAGAAGAA GCTAATTGGC 
    AAGTATTTTG AAGAGATCAG TCAAGATACT GGGAAATATG TCTTTGGGGT 
    TGATGACACT CTTAAAGCTC TTGAGATGGG TGCTGTTGAG ACTCTAATAG 
    TGTGGGAGAA CCTTGAAACC AACAGATATG TGCTTAAGAA CAGTGCGTCT 
    GGTGAAACTG TGATCAAACA TTTTAACAAA GAGCAGGAAG CTGACCAGAG 
    TAATTTCCGT GATCCGGCTA GTAATGCTGA GTTGGAAGTT CAGGAAAAAA 
    TGTCTCTTCT GGAATGGTTT GCTAATGAAT ACAAGAAGTT TGGTTGCTCG 
    CTTGAGTTTG TCACTAATAA ATCTCAAGAG GGATCTCAGT TTTGTAGAGG 
    ATTCGGTGGC ATTGGTGGTA TCTTGCGTTT ACCAGCTAGA TATCCGGTCA 
    TTTGATGAGC TTTCTGACGA TGAGGGATTG TATGAAGACT CTGATTAGCA 
    ATCAGCCAAT CACATGACTG TGCTGGCCCA GGGAAGGACG CCGCAGCTGC 
    AACGAGTCTG ATTCGCTCTA CTTACGCAGG AACACTTCGA AAGCAGCTAT 
    CCAGAAATTG ATGGGCGTGG GCCAGCCTCA TCCTATGCTG GAAGGGATTA 
    AGGCGAAAGG ATTACTGAGT CACATCATCA TGATAGTAAT GTGTCAAGAA 
    GTTATCGAAC TTAAAAGGCA TGCTGTTGCC AAGGTCGTAC TGGTTGTCTA 
    TTGTCTGCTT TTTGCAACTA TATTCGCAAG TTCTGAATTC TAGTGTCTGC 
    TTGAAATTGA GCACGCTGGA CGCGCTCGTG ACTATATGGT GTAATCTGCT 
    ACTTTTGCAG TTTTTGCAAT GAAGTTACTG TTATGCT

    Gene models with high sequence identity

    1. AT1G12920.1 [+] show detail - eukaryotic release factor 1-2
      E-value: 2e-119; Score: 35.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.4e-25
    Gene3D no description 1.1e-55
    HMMPanther EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUN 1.2e-173
    HMMPanther Peptide chain release factor eRF1/aRF1 1.2e-173
    HMMPfam eRF1 domain 3 2.4e-37
    HMMPfam eRF1 domain 2 3e-32
    superfamily L30e-like 2.7e-48
    superfamily Translational machinery components 9e-35

    See the detailed result >

    AT1G12920.1

    Model type
    Protein coding
    Short Description
    eukaryotic release factor 1-2
    Curator Summary
    Encodes a eukaryotic release factor one homolog.
    Computational Description
    eukaryotic release factor 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1); Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310; Bacteria - 0; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR