K14650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
root (PO:0009005)
  • abnormal (PATO:0000460)
    (Root::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14650

Determination of introduced cDNA(s)

  • J023012D14 - Rice Full-length cDNAs - Original: J023012D14

    full reading [+] show sequence

    Nucleotide sequence: J023012D14 - full reading
    GCTCCCTCTC ATCATCATCA TCATCCTCCT CCTCCCTATC CCCTTCTCCC 
    CCCTCTCTCT CTCTCTCCAC CCCGCGCGGC GGCCGCTTCC GATCCCTCTC
    CGACCGACCA AGCGCCGCCT CCAAGAATGG GGAGCTCGGA GAAGAACGGA
    ACTGCTTATG GCGAGTACAC CTATGCTGAA CTGGAGAGGG AGCAGTACTG
    GCCGTCTGAG AAGCTGAGGA TATCGATCAC CGGAGCTGGT GGTTTCATTG
    GATCCCACAT TGCTCGCCGT CTGAAGAGCG AGGGGCATTA CATCATCGCC
    TCCGACTGGA AGAAGAATGA GCACATGACT GAGGACATGT TCTGCCATGA
    GTTCCACCTT GTTGACCTTA GGGTCATGGA CAACTGCCTC AAGGTCACCA
    ACGGCGTCGA CCATGTGTTC AACCTTGCCG CTGATATGGG TGGTATGGGG
    TTCATTCAGT CCAACCACTC TGTGATCATG TACAACAACA CCATGATCAG
    TTTCAACATG CTCGAGGCTG CACGTATCAA TGGTGTGAAG AGGTTCTTCT
    ATGCCTCAAG TGCATGCATT TACCCTGAAT TCAAGCAGCT TGAAACTGAC
    GTTAGCCTGA AGGAATCTGA TGCCTGGCCT GCTGAGCCTC AAGATGCCTA
    TGGTTTGGAG AAGCTTGCAA CTGAGGAGCT CTGCAAGCAC TACACCAAGG
    ACTTTGGCAT TGAGTGCCGT GTTGGCCGCT TCCACAACAT ATATGGCCCC
    TTTGGAACAT GGAAAGGTGG CCGTGAGAAG GCACCAGCTG CATTCTGCAG
    GAAGGCTCAG ACTTCCACTG ACAGGTTTGA GATGTGGGGT GATGGCCTCC
    AGACCCGGTC CTTCACATTC ATAGATGAGT GTGTTGAGGG TGTTCTGAGG
    TTGACAAAGT CGGACTTCCG TGAGCCAGTG AACATTGGAA GCGATGAAAT
    GGTAAGCATG AACGAGATGG CTGAAATCAT TCTCAGCTTC GAGGATAGGG
    AGCTGCCCAT CCACCACATC CCTGGACCCG AGGGTGTCCG TGGCCGTAAC
    TCCGACAACA CCCTCATCAA GGAGAAGCTT GGCTGGGCAC CCACAATGAA
    GCTCAAGGAC GGGCTGAGGT TCACCTACTT CTGGATCAAG GAGCAGATAG
    AGAAGGAGAA GACCCAGGGC GTCGACATCG CGGGTTACGG CTCATCCAAG
    GTGGTGTCCA CCCAGGCCCC GGTTCAGCTG GGCTCCCTCC GTGCTGCCGA
    TGGCAAGGAG TAATTTCAAA GCTGCTACAC CATGAAGATC AATCAGCTCC
    TCTCAGCTTG ATCGTGGCCA TACCTTACTT CGCTACAGAT AGCTCACAGA
    AATGAATTCT TCTTGGAAAT CTTGCAACCT TTCAGAACAA CAACAGCCGT
    TCTTCCTGTC GTTATAACTC ATATGCAGTA CACCGGTTTC TTGTGTTTAA
    AAAGCTATAC TCGAGATTTC TTCCTCTTTT TTTTTTTCGC GTCGTGTTGG
    AAATTCTTCG TATGGATTAC ATTTTGTCAT ATGAACAATG AAACAATGGG
    AATGCTCTGC ATTACCTTTA TGAATAGATG ATGTGTTCTT CC

    Gene models with high sequence identity

    1. AT5G28840.2 [+] show detail - GDP-D-mannose 3',5'-epimerase
      E-value: 0; Score: 711.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 8e-68
    HMMPanther DTDP-GLUCOSE 4-6-DEHYDRATASE 1.5e-134
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.5e-134
    HMMPfam NAD-dependent epimerase/dehydratase 2e-45
    Gene3D NAD(P)-binding domain 4.3e-48

    See the detailed result >

    AT5G28840.2

    Model type
    Protein coding
    Short Description
    GDP-D-mannose 3',5'-epimerase
    Curator Summary
    Encodes a protein with GDP-D-mannose 3',5'-epimerase activity. The enzyme is involved in ascorbate biosynthesis. It catalyzes the conversion of GDP-D-mannose to GDP-L-galactose.
    Computational Description
    "GDP-D-mannose 3',5'-epimerase" (GME); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2).
    Link
    InterPro Scan - TAIR