K14703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14703

Determination of introduced cDNA(s)

  • J023031J12 - Rice Full-length cDNAs - Original: J023031J12

    full reading [+] show sequence

    Nucleotide sequence: J023031J12 - full reading 
    GGTTCGGATT TGCCTTCCTT TCCAAACCAG AGAGCGGTTT ACAGAAAACC 
    GCCTTTCTCT TCTTCCGTCT TCTTCCCTTT CCATTTCTCC CTTTTCCTAC 
    CTCGCCTCGC CGCCCGCACC GAGCAAACTC AAACCCTCGC CGCAAGAAAG 
    AAAAACAAAT CGAGAGAAAA AACCCTCGCT GCTCGCCGCC CCAAGCGAAG 
    CCAGCCATGG TGGTGTACAC GCAGGAGCAC GTGTACCGGC ACCCGTGGGA 
    CCGCGTCACG GCGGCGGCGT GGCGGAAGTT CACCGACCCG GCGTCGCGCA 
    CGGCGCTCTC CCACGTCGCC GACGTCCACA CCCTCCACCG CCGCGTCGAC 
    CCGGAGGCGG GGCGGCTGCA GGCTGCGCGC TCCATCACGG TGCGCTCCCC 
    GCCGCTCCCC TTCATCCTCC GCCGCCTCCT CCCCGCCGCG GCGTCGTCCC 
    CGTCCGGCGC GGCGCTCTGC CACTGCGTCG AGACCTCGCT CGTCGACGCG 
    CCGCGCCGCG CCATGGACGT CGTCGTCCGC AACGTCTCCC TCCGCGGCCT 
    CATCGAGGTC GAGGAGCGGT CCACCTACCG GCCGCACCCG GAGCGGCCCG 
    AGGAGTGGAC GCAGTTCAGG CAGGAGACCA CGATCCGGTG CCGACCGCTC 
    TCGGCCCTCG CCGCCGTCGC GGAGAAGGTC GAGACCCGCT GCGCCGAGAG 
    ATTCCTGCAG AACAGCGCCA AGGGGAGGGA GGTCGTCGAG CGGATCTGCC 
    GGTATCTCGA GGCCGAGGCC GCCGGTGCTG CATCCTCCGC CATCTGAGTT 
    GGCCTGGTTT GCGCCTCCTC ACTTGGCCTT CCTTGATCTG ATCGGATCGA 
    AGGATTCGCT CGATCTGTGC TGCGTGCGCG CGGCGGGACC TCGCCTCTTG 
    GCCAGGTCCC TTGCAGTTTT CCATTTTTTT TTATGAAATG ATGAGCTGAA 
    TCCTGAATGG AATAAAGCTT CTGGACATAT ACTTAATTTC TTCTTGACCG 
    TGGAACCATG TTAACCCCAA TTTGTGCCTG TTCTTGTTAA GCATATTCAG 
    ATATGCTATG ACATTTCTAG TTGTTATTGT GCTGATTTGA CGAATTCGTT

    Gene models with high sequence identity

    1. AT5G13070.1 [+] show detail - MSF1-like family protein
      E-value: 2e-50; Score: 196.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MSF1-RELATED 6.3e-46
    HMMPanther MSF1/PX19 RELATED 6.3e-46
    HMMPfam PRELI/MSF1 2.1e-31
    ProfileScan PRELI/MSF1 37.825

    See the detailed result >

    AT5G13070.1

    Model type
    Protein coding
    Short Description
    MSF1-like family protein
    Computational Description
    MSF1-like family protein; CONTAINS InterPro DOMAIN/s: PRELI/MSF1 (InterPro:IPR006797); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR