K14703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14703

Determination of introduced cDNA(s)

  • J023031J12 - Rice Full-length cDNAs - Original: J023031J12

    full reading [+] show sequence

    Nucleotide sequence: J023031J12 - full reading
    GGTTCGGATT TGCCTTCCTT TCCAAACCAG AGAGCGGTTT ACAGAAAACC 
    GCCTTTCTCT TCTTCCGTCT TCTTCCCTTT CCATTTCTCC CTTTTCCTAC
    CTCGCCTCGC CGCCCGCACC GAGCAAACTC AAACCCTCGC CGCAAGAAAG
    AAAAACAAAT CGAGAGAAAA AACCCTCGCT GCTCGCCGCC CCAAGCGAAG
    CCAGCCATGG TGGTGTACAC GCAGGAGCAC GTGTACCGGC ACCCGTGGGA
    CCGCGTCACG GCGGCGGCGT GGCGGAAGTT CACCGACCCG GCGTCGCGCA
    CGGCGCTCTC CCACGTCGCC GACGTCCACA CCCTCCACCG CCGCGTCGAC
    CCGGAGGCGG GGCGGCTGCA GGCTGCGCGC TCCATCACGG TGCGCTCCCC
    GCCGCTCCCC TTCATCCTCC GCCGCCTCCT CCCCGCCGCG GCGTCGTCCC
    CGTCCGGCGC GGCGCTCTGC CACTGCGTCG AGACCTCGCT CGTCGACGCG
    CCGCGCCGCG CCATGGACGT CGTCGTCCGC AACGTCTCCC TCCGCGGCCT
    CATCGAGGTC GAGGAGCGGT CCACCTACCG GCCGCACCCG GAGCGGCCCG
    AGGAGTGGAC GCAGTTCAGG CAGGAGACCA CGATCCGGTG CCGACCGCTC
    TCGGCCCTCG CCGCCGTCGC GGAGAAGGTC GAGACCCGCT GCGCCGAGAG
    ATTCCTGCAG AACAGCGCCA AGGGGAGGGA GGTCGTCGAG CGGATCTGCC
    GGTATCTCGA GGCCGAGGCC GCCGGTGCTG CATCCTCCGC CATCTGAGTT
    GGCCTGGTTT GCGCCTCCTC ACTTGGCCTT CCTTGATCTG ATCGGATCGA
    AGGATTCGCT CGATCTGTGC TGCGTGCGCG CGGCGGGACC TCGCCTCTTG
    GCCAGGTCCC TTGCAGTTTT CCATTTTTTT TTATGAAATG ATGAGCTGAA
    TCCTGAATGG AATAAAGCTT CTGGACATAT ACTTAATTTC TTCTTGACCG
    TGGAACCATG TTAACCCCAA TTTGTGCCTG TTCTTGTTAA GCATATTCAG
    ATATGCTATG ACATTTCTAG TTGTTATTGT GCTGATTTGA CGAATTCGTT

    Gene models with high sequence identity

    1. AT5G13070.1 [+] show detail - MSF1-like family protein
      E-value: 2e-50; Score: 196.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MSF1-RELATED 6.3e-46
    HMMPanther MSF1/PX19 RELATED 6.3e-46
    HMMPfam PRELI/MSF1 2.1e-31
    ProfileScan PRELI/MSF1 37.825

    See the detailed result >

    AT5G13070.1

    Model type
    Protein coding
    Short Description
    MSF1-like family protein
    Computational Description
    MSF1-like family protein; CONTAINS InterPro DOMAIN/s: PRELI/MSF1 (InterPro:IPR006797); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR