K14726

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14726

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14726

Determination of introduced cDNA(s)

  • J033027D16 - Rice Full-length cDNAs - Original: J033027D16

    full reading [+] show sequence

    Nucleotide sequence: J033027D16 - full reading
    GGTAGGCTCG TCGCGGCCAC GTACGCCATC CCGAGCTCGG GGGCTACCCC 
    GGTCGGAGGC GGAGCGCTTG GGGGCCGGGG TTTAATCGTG CGGAGGACTC
    GGTAGGGCTC GCCATACCTC GCGCCGTCCG GCGGCGCAGA GCGCGGCGTC
    GCCGCTGGGG AGAAGGACGG ACTCAACGAG ACGAGCGAGC GACGGCCGAC
    AGGCGAAGGC GTTCTCGCTT CTTGGCCTCT CGCCGTTGAA TTGGAGACCC
    ACATTGGGCT TGTTTTGTGT GTTACTAGCA TCACCAAGAG TTCCCCTACT
    ACTCCCAATT TCAAATTTTG GGGTTTTTCG AGCAAAAAAA ATGGATCCAA
    CAGATATCCA AACCAGCTTC CAAAAATTTT GAGACCCTAA TCCCGTGTTT
    CCGTTCTCCA CCAGTAGAGA ATACCTCCCG CTCCCAATCC ACTGCAGCCG
    GGCAGTTTTC GCGCGCTGCC GAGGTGCTTG GTTCCCCCAT CTCCATTGAT
    TCCCCATCTC GTGCGATTGG CGGAGCTGAT GAGTGACGAC AGCCACGGGC
    GAGCGGGAGG TGGCACGTCG ACAGGCGGCG GAGGGCCGCC AGCGCAGCTG
    CGGCAGCCGG CAAGGGCGGC TGGGTGGGCT GCAGGCTGTG GCTGCAGTTG
    GGCAGCGCGG CAGTAGCAGG TGGCGGGCCA ACAAGTAGCA GGGCAGGCCG
    GCAGCAGCAG CAGATCAACA GGATGATTCA ATCTTTGCTA TTTGCCTTAT
    CCACCTTAAA GATAGCCTAT TAATCGATCC ATCTTTGCTA GGAGTATCTG
    TTTTGCAGAT TATTTATATG TCTATCCTCC TTTGGCTATC CCATGTACTG
    CTGAAACTTC ATTACTTGAG GTTATATTCA TGTGCATCCT CGTGCACTCC
    TGTGTCCATC TTATATGGTA CCAACAAGAA GTTGAAGTGT TTGGGTGATC
    GCTTTGGGGA AATGGAAGGC AGCAACCCAC CTGGTAATAT GACACAGGGA
    CCTTCCTATG GGAGTTTAGA TTTGCATGGT ATCTCCAAGC AAATGCATCC
    TCCAAACTCA GGAAATCAGG GCTTCAACCA GCCTCAGATA CCAGGGAATT
    TTACCATTCC TATGGATAGG GTTACAGAGC CTGATAACAT CTCTGATGGA
    GTTCAGTTAG GACAACATGG GAAGATTGCC CATCATCACC ATCACCACAG
    ACACCACTCA AAGAACCATG GGAGTGATGA AGAGGAGCAC GATATGAATG
    AGGATGCTGC TGATGGCAAA GACAAGAAGG GCTCTCCATG GCATCGGATG
    AAGTGGACAG ATTCAATGGT GAAGCTTTTG ATTACTGCAG TATCCTACAC
    AGGGGAGGAT CCTGGAGCTG ATTTAGGCGG TGGGAGGAGG AACTATTCAA
    TGATGCAAAA GAAGGGAAAA TGGAAAGCAA TATCAAAGGT CATGGGCGAG
    AGAGGTTGCC ATGTGTCGCC ACAGCAGTGT GAGGATAAGT TCAATGACCT
    TAATAAGAGA TACAAAAGAC TAACAGATAT CCTTGGAAGG GGTACTGCTT
    GTAATGTTGT GGAGAATCAC TCACTTCTTG ATCACATGGA TATTTCTGAG
    AAGATGAAAG AGGATGCAAG GAAGATACTG AACTCCAAAC ACTTGTTCTA
    TGAAGAGATG TGTTCCTACC ATAATAATAA CCGTATAAGT CTGCCTGAAG
    ATCCCGCACT TCAGCAGTCA CTACAGCTTG CTCTTAGATG TAAAGAGGAT
    AATGATTTCA TGAGGCATGC AAGTGGAGAT GCTGAACTAG ATGATGATCA
    GAGTGAAGAT TCAGATTATG AGGAGAATGA GGAAGAACAT CGAGCAGTTG
    ATACCAATAT AAGGGGCCCC TCAATGCATA AAAGGATGTG GCATGTTGTA
    GATCATGGTG ATGTAGGTTT TGTCACCTCA TGCTCGAATG ATGGTAGTGG
    GAGGTCTGAT CCCTATGACG TGTTGGATAT CAACAAACCC TTTCCAGATG
    GATGTGATTT GGCTTTGGTG CAAAAAGACT TGGCTCTGAA AGCAGCAGAG
    ATTCAAAAAC ATCGTTTGCA GATTGAAACC AAGGCTGTGC AACTCGCAAA
    GCAACGTCTC AAGTGGGAGA TGTTCAGGAA GAACAAGGAC TTGGAATTGG
    AAAAGTTGGC GTTGGAGAAT GAACAAATGA TGCTTCAGAA TAAGCGGTTT
    GAGCTTGACC TAAGACACAA GGAGCTAGAA CTTGAGATTA AGATAAAGGG
    CAATGCTAAT CATCCATGAT CTTTGTTCTG TTAGCACTTC ATTTCGCAAT
    ATGGTTGCAG ATCAATTCAA TTCAGGACCG TGTTTATGCA AGATGGTAGA
    GGTGGCAGAT TGTTTATGCA AGATGGTAGA GGTGGCAGAT TATCTGTGAC
    TACTGACAAG TGACAACAAT TTCAATGCTT TATAGCTAGC TCAGTGATCC
    TCTCCTCTTG TTGTTTATAT ATCATTATAT CTCCTGATTC TCTCTACTTG
    TAAAATTTCC ATGTGATACT GGGCTCCATC TGTATTCTAA AGTTTTCATC
    ATTTTTTTCT ATCCAACTTT GTTTTACTCA ATC

    Gene models with high sequence identity

    1. AT1G21200.1 [+] show detail - sequence-specific DNA binding transcription factors
      E-value: 1e-81; Score: 301.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21200.1

    Model type
    Protein coding
    Short Description
    sequence-specific DNA binding transcription factors
    Computational Description
    sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR