K14728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14728

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14728

Determination of introduced cDNA(s)

  • J023047K23 - Rice Full-length cDNAs - Original: J023047K23

    full reading [+] show sequence

    Nucleotide sequence: J023047K23 - full reading 
    GGCGGTGAGC CATTGATTTG CTCTTGCCCG TGTGTGAGAA GCAGAAGAAG 
    AAGATGATGA AAATTTGGAA TTTATTTGGG TTCTTGCAGG TTGCTGCTTC 
    GTGGTGTGCT CGTCGAGGGA GGAGGCAGAC AAGGCCATCG CCGCGTACCA 
    CAACAAGTGC ACCCTCCCAG GAGCGTCCAG GGCAATGCAG GTAAAATACG 
    CGGACGGCGA GCTGGAACGA TTAGCCGCAG AGCAGAAGCT TTTCATTGGC 
    ATGCTTCCAA GGGATGTGAA GGAGAATGAA GTTTCTGCAT TGTTTTCGCA 
    GTACGGAAAT ATTAGACAAC TGAAGGTACT GAGAAGTCCA CAGAAAACAA 
    GAAAAGCTGC AGCCTGTGCT ATCCTGGAAT TTGGAAGCAA AGAACATGCT 
    AGAGCGGCCA TTGAAGCTTT GAATGGCACA CGTGTTGTGT TCAATGGTTC 
    AAGTGCGACT TTGGTTGTTA AGTTGGCTGA CACTGAAAGG GAAAAGCAAG 
    CTAGAAAGGC ACAGAAAGCT CAGGCTCAAC CTTCTAAGCC CTTAAGATTT 
    TATCTCTTCC CCCAGCTGCT ATCAATATCT GGAGCACCAC AGATGAGCTT 
    TCTTCCTCCA TATAATGTAT TGGATTACAA GACTGAAGGA ACAACGGATC 
    CAGAATTGAA AGATCTAATG AAGATGACAA ACGACAAACT TGAGATGCTA 
    GTGACTGAGC TCAAGAGCGT GGTGAACTTA TTAGAGAATC GAGTTACATA 
    TAATGATCCA ATACAGCCAA TTCAGCATTC TCTCTTACCT GTAGAGCATG 
    ACGAGAAGCA ATATAAGCCT AATGAGTGTG ATTCCAAAAC GTTAGAGGTA 
    CCAGGGCATT ATGGACACAC GAAGAACCCA TTGGCATTGT ACAGCACTAT 
    GTACCCACAT GTCAATCAAG GAAATTTACT CCAGGGACTC AACACAAATA 
    TATTTCCAGG AACAGATCCT AAAATTTCGA ACCTGATTCA ATCTGCTGGA 
    TACATACAAC CTCCTTACCC TGATTTGTCA GGTCTTCATT ACCCAGTATC 
    ATATGCAGGT GCCTTAGTGG GAGATACACC ACAGTATTTC TCTGATGGTA 
    AGGTAAACAT ACCAAACAGT CATAGCAATC ATGCCTCATC TGCAGCAAAC 
    ACAAAGATAG GGAGTAAGAT TGAAGGACCT CCTAGGGCTA ATTTATTTGT 
    CTATGACATC CCTCAAGAAT ACGGTGATGA AGATCTGGCA AATCTATTTC 
    AAGAATTTGG TAGGATCTTG AGTACCAAGG TTTTCATTGA CAGAGCTACT 
    GGTGTCAGTA AATGTTTCGG CTTTGTTAGT TATGACACAC CAGCATCAGC 
    TCAGGCTGCT ATCAGGAGGA TGAATGGCTC ACAGATAGGT GGCAAAATGC 
    TCAAGGTACA GCTCAAGAGG GAAACATGAT GTGACAACTG ACAACCCAGT 
    TGACATGTAG TGAAATTATG ATGTCTGGAC ATTGTAGTGC TGAGAGTACC 
    ATCCTGCATA GTGAACAAGG CAGTGCAGCT GGATATGGAA AACCATAGAT 
    GTAGCTATGA CAAGGTTGTT CATTGTTACT CTTGAAGATC GCCAGAATTT 
    CTAGGCACAG TTCTCTTGTT GCATTACACA CAACTAATGC ATATGAACAA 
    GCCATGTAAT TGGATCTGGC ATTTGGTCAA GCATAAGGTA GTTCCGACAT 
    TCGATTATGG AACAAATATG TTATAGACTC C

    Gene models with high sequence identity

    1. AT1G03457.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 5e-40; Score: 162.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 15.699
    ProfileScan RNA recognition motif, RNP-1 18.001
    HMMPanther Ribonucleoprotein, BRUNO-like 1.5e-91
    HMMPanther RNA-BINDING PROTEIN 1.5e-91
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMSmart RNA recognition motif, RNP-1 0.00000000000024
    HMMSmart RNA recognition motif, RNP-1 1.4e-24
    superfamily RNA-binding domain, RBD 1.9e-24
    superfamily RNA-binding domain, RBD 1.9e-16
    Gene3D Nucleotide-binding, alpha-beta plait 0.0000000000022
    Gene3D Nucleotide-binding, alpha-beta plait 1.4e-24
    HMMPfam RNA recognition motif, RNP-1 0.00000000000014
    HMMPfam RNA recognition motif, RNP-1 6.7e-19

    See the detailed result >

    AT1G03457.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Ribonucleoprotein, BRUNO-like (InterPro:IPR015903), Paraneoplastic encephalomyelitis antigen (InterPro:IPR002343), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein-defense related 1 (TAIR:AT4G03110.1); Has 28459 Blast hits to 16672 proteins in 823 species: Archae - 14; Bacteria - 1483; Metazoa - 15787; Fungi - 3162; Plants - 5005; Viruses - 0; Other Eukaryotes - 3008 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR