K14731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: K14731

Determination of introduced cDNA(s)

  • J013020M15 - Rice Full-length cDNAs - Original: J013020M15

    full reading [+] show sequence

    Nucleotide sequence: J013020M15 - full reading 
    GTGAAAAACC GCATCCCGCA ACTCCACCGC TCCCAATCTC GATCGAAACG 
    CGAGGGTTTC GCATCTCCGC CGACGCCTAG AGGAAGAAGG GTTCCGCCGC 
    CGGTAGCCAA GCCATGCCGA AGAACAAGGG TAAGGGAGGG AAGAACCGCA 
    AGAGGGGTAA GAACGAGGCC GACGACGACA AGCGCGAGCT GGTGTTCAAG 
    GAGGACGGGC AGGAGTACGC CCAGGTGACG CGGATGCTCG GCAACGGCCG 
    CTGCGAGGCC ATCTGCGTCG ACGGCACCAA GCGCCTCTGC CACATCCGCG 
    GCAAGATGCA CAAGAAGGTG TGGATCGCCG CCGGGGACAT CATCCTCGTC 
    GGCCTCCGCG ACTACCAGGA CGACAAGGCC GACGTCATCC TCAAGTACAT 
    GAACGACGAG GCCCGCCTCC TCAAGGCCTA CGGCGAGCTC CCCGACACCC 
    TCAGGCTCAA CGAGGGCGTC GACGTCGACG GGCCCGAGGA CGGCGGCGAC 
    CACGACGACT ACATCCAGTT CGAGGACGAG GACATCGACA AGATCTAAGC 
    TCTTTTCTTC TTTCTCCGCA GCTACAATTT ACTGCTATGT TCTAATTAAT 
    AGCTATGTGT GGTACTATGT GGGCTGGCTG TTATGGATTG TTTGGTTGCC 
    GGTTTCATCT TGTGATATGA GATATTTGTC ATGGTTTGAG GTGGTTAAAT 
    AATTGTTGGA TTCCGTAACT TTAATCTGGT ATACATGATG GTTATGCGT

    Gene models with high sequence identity

    1. AT2G04520.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 1e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Translation initiation factor 1A (eIF-1A) 5e-26
    HMMPanther Translation initiation factor 1A (eIF-1A) 1.7e-72
    PatternScan Translation initiation factor 1A (eIF-1A), conserved site 0
    superfamily Nucleic acid-binding, OB-fold-like 2.2e-50
    HMMTigr Translation initiation factor 1A (eIF-1A) 8e-35
    Gene3D Nucleic acid-binding, OB-fold 1.2e-54
    HMMPfam S1, IF1 type 5.7e-27
    HMMSmart Translation initiation factor 1A (eIF-1A) 1.5e-48
    ProfileScan S1, IF1 type 31.357

    See the detailed result >

    AT2G04520.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR