K14735

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14735

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14735

Determination of introduced cDNA(s)

  • J023144P06 - Rice Full-length cDNAs - Original: J023144P06

    full reading [+] show sequence

    Nucleotide sequence: J023144P06 - full reading 
    GGACCAGGGC AAGCAGCAGT AGCAAAGCAG AAGCAGAGGC AGAGGCAGCA 
    CAGCTTGATC GTTCTTCCAT CGATCGATCG GCAGCTAGCG CTCACAGTAC 
    TCTCGATCGC TCGCTCGCGC TGGTCCGTTG ATTCGTTGTC CTAGATAGAT 
    AGCTAAAGGG GGGCCATGGC ATCGACGACA GCGCCGTCGA GGACCAACTC 
    TCGGGTGAAC TACTCGAACG AGATCCATGA CCTCTCCACC GTGCAGAGCG 
    TCTCCGCCGT CCCCAGCGTC TACTACCCCG AGAAATCCTT CGCCGACATC 
    TTCCCTCCTA ACCTCCTCAA GAAGGTGATA TCGGAGGTGG TGGCGACGTT 
    CCTGCTTGTG TTCGTGACGT GCGGGGCGGC GTCCATCTAC GGCGAGGACA 
    TGAAGCGCAT CTCGCAGCTG GGGCAGTCGG TGGTCGGTGG CCTCATCGTC 
    ACCGTCATGA TCTACGCCAC CGGCCACATC TCCGGCGCCC ACATGAACCC 
    GGCCGTCACC CTCTCCTTCG CCTTCTTCCG GCATTTCCCC TGGATTCAGG 
    TGCCGTTCTA CTGGGCGGCG CAGTTCACGG GGGCGATGTG CGCGGCGTTC 
    GTGCTGCGGG CGGTGCTGTA CCCGATCGAG GTGTTGGGGA CGACGACGCC 
    GACGGGGCCG CACTGGCACG CCCTCGTCAT CGAGATCGTC GTCACCTTCA 
    ACATGATGTT CGTCACCTGC GCCGTTGCCA CCGACTCCAG AGCGGTGGGT 
    GAGTTGGCGG GGTTAGCAGT CGGTTCCGCG GTTTGCATTA CGTCGATCTT 
    CGCAGGGCCG GTGTCAGGAG GATCGATGAA CCCGGCGAGG ACGCTGGCGC 
    CGGCGGTGGC CAGCAACGTC TACACCGGCC TCTGGATCTA CTTCCTCGGC 
    CCCGTCGTCG GCACCCTCTC CGGCGCATGG GTCTACACCT ACATCCGCTT 
    CGAGGAGGCC CCCGCCGCCG CCGGCGGCGC CGCCCCCCAG AAGCTCTCCT 
    CCTTCAAGCT CCGCCGCTTG CAGAGCCAGT CCATGGCCGC CGACGAGTTC 
    GACAACGTCT AATCGCCCTG ACGCCATGGA CCCACACCGT ACTGCTATAC 
    TGTATACGTA TATACATATG TATGTATGTA CTGCACGCGT ACGTACGTAC 
    GCACGTGCAC GAGCGCGGGA AGCCATTGTT TGTACGATCG ACGACTCTAC 
    CAAGTCGAAA TGTAATGTGT ACGGTGTCTG TGTACGTGTG GTGGTGCTGT 
    GTGTACGTGG GCCCGCTCTG CTTGAAGAAG AAGAGAGAGC TTGAGCTAGC 
    TATACGTGTA TACATGTACC GTGTACTATA CGTACGTGCG TATTTGTCTT 
    TTTTTTTTCC TCTCTTCCCT GCGCCTACGT GCGTATGTAC GTACGCTTTC 
    TCTCGCTGGT ATAATCAGCT GGCGATCGAT AGCGGCAAAA ATATGTT

    Gene models with high sequence identity

    1. AT5G37810.1 [+] show detail - NOD26-like intrinsic protein 4;1
      E-value: 1e-54; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Major intrinsic protein, conserved site 0
    HMMPanther NODULIN-26-RELATED 3.3e-114
    HMMPanther Major intrinsic protein 3.3e-114
    HMMTigr Aquaporin 4.8e-64
    superfamily Major intrinsic protein 7.3e-57
    Gene3D Major intrinsic protein 2.8e-57
    HMMPfam Major intrinsic protein 5.2e-54
    FPrintScan Major intrinsic protein 3.9e-44
    FPrintScan Major intrinsic protein 3.9e-44
    FPrintScan Major intrinsic protein 3.9e-44
    FPrintScan Major intrinsic protein 3.9e-44
    FPrintScan Major intrinsic protein 3.9e-44
    FPrintScan Major intrinsic protein 3.9e-44

    See the detailed result >

    AT5G37810.1

    Model type
    Protein coding
    Short Description
    NOD26-like intrinsic protein 4;1
    Computational Description
    NOD26-like intrinsic protein 4;1 (NIP4;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 4;2 (TAIR:AT5G37820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR