K14743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14743

Determination of introduced cDNA(s)

  • J033075G20 - Rice Full-length cDNAs - Original: J033075G20

    full reading [+] show sequence

    Nucleotide sequence: J033075G20 - full reading
    GACCCTTGTG CCCTTATCTC CTATGGTTGC TTCCACTGTC ACCAAAGGGG 
    GACTCGCCAT CTACCTTGTT CCTCAGTTCA TGCGAATTTC ATGCGGTCCT
    GGGCTGTGAC TGGGAGTAGA TTGAGGGTTG ATCTCGTTTG CGGAGTAACA
    AATTTGCAAG CCTACAACTG CTAGGGAGAA TTTGACTAAA AATGGGGTCG
    TGTTGCAGCA GAGCTACGTC TCCAGATTCT GGTCGAGGAG GAGCAAACGG
    TTATGGCTAT TCTCACCAGA CAAAACCTGC TCAGACAACT CCTAGCTATA
    ACCATCCTCA GCCGCCGCCG CCAGCTGAGG TGAGGTACAC ACCATCAGCA
    ATGAACCCTC CGGTAGTCCC ACCTGTGGTT GCCCCACCGA AGCCCACCCC
    AGACACAATT CTTGGAAAGC CGTATGACGA TGTGCGCTCG GTTTACTCCC
    TTGGAAAGGA ACTCGGAAGG GGACAGTTTG GGGTGACATA CCTGTGCACG
    GAGATCGCTA GTGGTAAGCA GTATGCTTGC AAATCCATCT CTAAGCGCAA
    GCTTGTGAGC AAGGCCGACA AGGAGGACAT TCGCCGGGAG ATTCAGATCA
    TGCAGCACCT ATATGGACAA CAAAACATTG TCGAGTTCCG GGGAGCATAT
    GAGGACAAGA GCAATGTCCA TGTTGTCATG GAGCTCTGCG CTGGTGGGGA
    GCTGTTTGAT CGGATCATTG CCAAGGGGCA CTACTCAGAG CGTGCGGCTG
    CTACCATCTG CAGGGCAGTG GTGAATGTTG TCAACATTTG CCATTTTATG
    GGAGTGATGC ATCGTGATTT AAAACCGGAG AACTTCTTAC TTGCAACCAA
    AGAAGAGAAT GCAATGCTCA AAGCCACTGA TTTTGGTCTC TCAGTTTTCA
    TTGAAGAAGG AAAAATGTAT AGAGACATTG TTGGAAGTGC TTATTATGTT
    GCTCCTGAAG TCCTTCGGCG GAATTATGGT AAAGAGATTG ATGTATGGAG
    TGCAGGCGTT ATTTTGTACA TTCTTCTCAG TGGTGTTCCT CCATTTTGGG
    CTGAAACTGA AAAGGGAATA TTTGATGCTA TTCTTCAAGG GGAGATTGAC
    TTTGAGAGTC AACCATGGCC ATCAATATCC GAGAGTGCTA AAGACCTTGT
    TAGAAAGATG TTGACACAAG ATCCAAAGAA AAGAATTACT TCGGCCCAAG
    TTCTCCAACA TCCCTGGCTC AGAGATGGAG AAGCATCTGA CAAACCTATT
    GACAGCGCTG TTCTTTCTAG GATGAAGCAA TTCAGAGCAA TGAACAAGCT
    GAAAAAGATG GCTCTGAAGG TTATTGCTTC AAACCTTAAT GAGGAGGAGA
    TCAAGGGCCT GAAGCAAATG TTCACAAACA TGGACACAGA CAACAGCGGG
    ACCATCACAT ATGATGAACT CAAAGCAGGA TTAGCCAAAC TTGGATCAAA
    GCTTTCAGAA GCTGAAGTAA AGCAGTTGAT GGAAGCTGCT GATGTAGACG
    GCAATGGATC CATCGACTAT GTTGAATTTA TCACTGCCAC AATGCATAGA
    CACAAGCTCG AAAGAGATGA GCATTTGTTT AAGGCATTCC AGTATTTTGA
    CAAAGACAAC AGTGGCTTCA TCACAAGAGA TGAACTGGAA TCCGCTTTAA
    TCGAGCATGA AATGGGCGAT ACAAGTACCA TAAAGGATAT TATATCAGAA
    GTCGACACGA ATAATGATGG GAGGATTAAC TACGAGGAAT TTTGCGCTAT
    GATGAGAGGA GGGGGGATGC AGCAGCCTAT GAGGCTCAAA TAGTCTGTTT
    CCTTGTAGAA AATGATGTAC AATTACATTA GTAAACTGTT TTCGCCTTCT
    TTTTTTTGTT CCATGGATGG TAGTCGACGG ATAAAAGGTT TACCCTGGAC
    GCAGCTTTTG CATTGTTGAG ATGATTGTGT ATATTTTCTT GCCTTGCCCG
    TGTATGGTGT AGTGATTTGA ATGTCCTCCC TTTTGTAAGT TGTTTCTGCA
    AGTACACACA ATAAAAGAGC ATTTTTGCAC CTCAATTCTT CTGC

    Gene models with high sequence identity

    1. AT4G04720.1 [+] show detail - calcium-dependent protein kinase 21
      E-value: 0; Score: 735.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 48.287
    ProfileScan EF-HAND 2 14.848
    ProfileScan EF-HAND 2 11.166
    ProfileScan EF-HAND 2 13.928
    ProfileScan EF-HAND 2 12.672
    Gene3D no description 1.3e-23
    Gene3D no description 5.3e-59
    Gene3D EF-hand-like domain 4.8e-20
    HMMSmart Serine/threonine-protein kinase domain 1e-97
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0000000000027
    HMMSmart Calcium-binding EF-hand 0.00001
    HMMSmart Calcium-binding EF-hand 0.046
    HMMSmart Calcium-binding EF-hand 0.0044
    HMMSmart Calcium-binding EF-hand 0.0000008
    HMMPanther Calcium-dependent protein kinase 1.5e-278
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 1.5e-278
    Coil coiled-coil 0
    HMMPfam Serine/threonine-protein kinase-like domain 7.5e-72
    HMMPfam EF-hand 0.00000015
    HMMPfam EF-hand 0.000002
    HMMPfam EF-hand 0.0000000097
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 4.7e-84
    superfamily EF-hand 1.1e-70

    See the detailed result >

    AT4G04720.1

    Model type
    Protein coding
    Short Description
    calcium-dependent protein kinase 21
    Curator Summary
    member of Calcium Dependent Protein Kinase
    Computational Description
    calcium-dependent protein kinase 21 (CPK21); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 15 (TAIR:AT4G21940.1); Has 137194 Blast hits to 129287 proteins in 3977 species: Archae - 168; Bacteria - 14125; Metazoa - 50898; Fungi - 18038; Plants - 29874; Viruses - 499; Other Eukaryotes - 23592 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR