K14811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14811

Determination of introduced cDNA(s)

  • J013045D16 - Rice Full-length cDNAs - Original: J013045D16

    full reading [+] show sequence

    Nucleotide sequence: J013045D16 - full reading 
    GTTCTGGTCT CCACCCTCCC TTTCTCTCTC TAGTCCTCTA GAGCCGAGGG 
    TTGCTGCGAG GAAAGCGTAG GAGAGAGGGT TGCTGGCTGC AGCCCCGGCG 
    AGAAGCGCCA TTGTTGTCGT CGTTGGGCCA AGAACCAAGA AACCAAGAAG 
    ACAAGAGGAG GAGGAGGGGG GAAGAAGACG GAAGAGAGAG AGGAAGAGGC 
    ACTGGATAGG TGCATCCTTT GCCTCTAGCC GCTTTCTCTT TCTCCTTCCT 
    GGAGGGGGGA GAGAGAGAGA GGAGTGGGAG AGGAAAGGAG AGTAGATGGG 
    CGAGATGGTC TTGGCCGGGT ATGGCATGGA CAAGGCGGTG AGGAGCAGCG 
    TCAGCTTCGG GACGCCGTGC GGCAGGCTGC TGCGCGAGCT CGAGCAAATA 
    TGGACTGAGA TTGGGGGGTT GAGATTGATG GAGAAGAAGA AGGTGGCGGT 
    GCCGCTGGTG TGCCACGGCC ACTCGCGCCC GGTCGTCGAC CTGTTCTACA 
    GCCCCGTCAC GCCCGACGGG TACTTCCTCA TCAGCGCCAG TAAGGATGGG 
    AATCCAATGC TTCGTAATGG TGAGACTGGA GATTGGATTG GGACTTTCCA 
    AGGTCATAAA GGGGCTGTCT GGAGCTGCTG CCTAGACACA AATGCTCTGC 
    GTGCTGCATC TGGTTCTGCT GACTTTTCAG CCAAAGTTTG GGATGCACTA 
    ACAGGTGATG AGCTACATTC ATTTGAACAC AAGCACATTG TCCGTGCATG 
    CGCGTTTTCT GAGGATACCC ACCTGTTGCT CACTGGAGGC GTAGAAAAGA 
    TTTTGCGTGT CTATGATATG AATCGTCCAG ATGCAGCACC AAGAGAACTT 
    GACAAAGCAC CTGGTAACGT GCGAACTGTT GCTTGGCTTC ATAGTGATCA 
    AACAATACTA AGCTCGTGCT CTGATATGGG AGGAGTAAGA TTGTGGGATG 
    TGAGGACTGG AAAAATTGTC CAAACTCTTG AAACCAAGGC GCCTGTGACT 
    AGCGCAGAAG TAAGTCAAGA CAGCAGGTTC ATCACTACAG CTGATGGCTC 
    GAGTGTTAAA TTTTGGGATG CTAATCACTT TGGGCTTGTT AAAAGCTATG 
    ATATGCCTTG CACTGTGGAG TCAGCTTCCC TGGAACCAAA ATCTGGGAGC 
    AAATTTATTG TTGGGGGAGA AGATATGTGG GTTCATGTAT TTGATTTCTT 
    CACTGGTGAA GAAATAACCT GTAACAAGGG GCATCATGGT CCTGTCCACT 
    GTGTCCGCTT TGCACCTGGC GGTGAATCTT ATGCATCAGG ATCAGAAGAT 
    GGCACCATCC GGATCTGGCA GCTGAGCCCA CCTAACGCTG ATGACAATGA 
    GGCGGTCAAT TCAAATGGCA AACCAACAGT TGGGGTAAAT GAGGTTGCAC 
    GCAAGATCGA AGGCTTCCAC ATTCCCAAGG AGGAGGAGCA GCAGCAGCAG 
    CAGGCTGAGG GGTAGGACTA CAAGGTTGGC AAACATGGCA GTGCTTGGTG 
    CTTACTGGGA GATGATTGCT TGTCGATGCT CCTCTCCTTC CCGTTTCTCC 
    CTTGCTTTGT TGATGCCCTT GGTTCCCGAC GCAAGGGGGG AGAGATCTTG 
    TCCTCCGTGA CCAAAACGGT GGATTTCTGT ATGGGGCCCT CACCAAATAG 
    ACAGTGTCAG GGTAGTATCT ATCTACAGTG CCAAAATAAA CCAAGAGGAA 
    AGCAAGTTGG TAGTTTAGTA TCGTTGATTG CATTCACAGA AGTGAAAGTC 
    TTGTATTCCG CTGGTGGCGG TGATACAGCA GATGCCATTG TGTTCACCGG 
    TTTTTGCCTC CCCTACCCTT CTATGGACTC TTTTCTTATC

    Gene models with high sequence identity

    1. AT3G15610.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 8e-164; Score: 574.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE-THREONINE KINASE RECEPTOR-ASSOCIATED P 1.2e-172
    HMMPanther WD40 REPEAT PROTEIN 1.2e-172
    Gene3D WD40/YVTN repeat-like-containing domain 8.7e-62
    ProfileScan WD40 repeat 2 11.277
    ProfileScan WD40 repeat 2 8.503
    ProfileScan WD40 repeat 2 14.519
    ProfileScan WD40-repeat-containing domain 29.794
    HMMSmart WD40 repeat 13
    HMMSmart WD40 repeat 0.0000026
    HMMSmart WD40 repeat 0.000023
    HMMSmart WD40 repeat 1.6
    HMMSmart WD40 repeat 0.0044
    HMMSmart WD40 repeat 44
    HMMSmart WD40 repeat 0.000000015
    superfamily WD40 repeat-like-containing domain 7.9e-66
    PatternScan WD40 repeat, conserved site 0
    HMMPfam WD40 repeat, subgroup 0.077
    HMMPfam WD40 repeat, subgroup 0.0000033
    HMMPfam WD40 repeat, subgroup 0.00074
    HMMPfam WD40 repeat, subgroup 0.079
    HMMPfam WD40 repeat, subgroup 0.27
    HMMPfam WD40 repeat, subgroup 0.00000000059

    See the detailed result >

    AT3G15610.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G52730.1); Has 43706 Blast hits to 23089 proteins in 800 species: Archae - 76; Bacteria - 7357; Metazoa - 15603; Fungi - 10314; Plants - 4879; Viruses - 0; Other Eukaryotes - 5477 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR