K14815

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14815

Determination of introduced cDNA(s)

  • J013116M08 - Rice Full-length cDNAs - Original: J013116M08

    full reading [+] show sequence

    Nucleotide sequence: J013116M08 - full reading 
    GTGAAGCTGG AGAGCTAGCA GAAACAAACC CCTCTCACTC CCAGATACCT 
    GCTGCTGCCA CTAGCCCACT ACCATGGATC CTTGCAAGTT CCGGCCGTCG 
    AGCTCGTTCG ACACGAAGAC GACGACGACG AACGCGGGAG CTCCGGTGTG 
    GAACGACAAC GAGGCGCTGA CAGTGGGGCC CAGGGGGCCG ATCCTCCTCG 
    AGGACTACCA CCTGATCGAG AAGGTGGCGC ACTTCGCCCG GGAGCGCATC 
    CCGGAGCGCG TGGTCCACGC CCGCGGCGCC TCCGCCAAGG GCTTCTTCGA 
    GTGCACCCAC GACGTCACCG ACATCACCTG CGCCGACTTC CTCCGGTCCC 
    CGGGCGCCCA GACCCCCGTC ATCGTCCGCT TCTCCACCGT CATCCACGAG 
    CGCGGCAGCC CGGAGACGAT CCGCGACCCG CGCGGGTTCG CCGTCAAGTT 
    CTACACCCGC GAGGGCAACT GGGACCTCCT CGGCAACAAC TTCCCCGTCT 
    TCTTCATCCG CGACGGCATC AAGTTCCCCG ACGTCATCCA CGCCTTCAAG 
    CCCAACCCGC GCTCCCATGT CCAGGAGTAC TGGAGGGTCT TCGACTTCTT 
    GTCCCACCAC CCCGAGAGCC TCCACACCTT CTTCTTCCTC TTCGACGACG 
    TCGGCATCCC CACCGATTAC CGCCACATGG ACGGCTTCGG CGTCAACACC 
    TACACCTTCG TCACCCGCGA CGCCAAGGCC AGGTACGTCA AGTTCCACTG 
    GAAGCCCACC TGCGGCGTCA GCTGCTTGAT GGACGACGAG GCCACGCTCG 
    TCGGCGGCAA GAACCACAGC CACGCCACCC AGGACCTCTA CGACTCCATC 
    GCCGCCGGCA ACTTCCCCGA GTGGAAGCTG TTCGTCCAGG TGATCGACCC 
    GGAGGAGGAG GAGAGGTTCG ACTTCGACCC GCTGGATGAC ACCAAGACAT 
    GGCCGGAGGA CGAGGTGCCG CTCCGGCCCG TGGGGCGCCT CGTTCTCAAC 
    CGCAACGTCG ACAACTTCTT CAACGAGAAC GAGCAGCTGG CGTTCGGGCC 
    GGGGCTGGTG GTGCCGGGGA TCTACTACTC CGACGACAAG ATGCTGCAGT 
    GCAGGGTGTT CGCGTACGCC GACACGCAGC GCTACAGGCT GGGGCCAAAC 
    TACCTGATGC TGCCGGTGAA CGCGCCCAAG TGCGCCCACC ACAACAACCA 
    CTACGACGGC GCCATGAACT TCATGCACCG GGACGAGGAG GTGGACTACT 
    ACCCATCGCG CCACGCGCCG CTCCGCCACG CGCCGCCGAC GCCCATCACG 
    CCGCGCCCCG TGGTGGGGAG GAGGCAGAAG GCGACGATAC ACAAGCAGAA 
    CGACTTCAAG CAGCCCGGGG AGAGGTACAG GTCGTGGGCG CCGGATAGAC 
    AGGAGAGGTT CATCCGCCGC TTCGCCGGCG AGCTCGCGCA CCCCAAGGTC 
    TCCCCTGAGC TCCGCGCCAT CTGGGTCAAC TACCTCTCCC AGTGTGATGA 
    GTCGTTGGGG GTGAAGATTG CGAATAGGCT CAACGTGAAG CCAAGCATGT 
    GAAGAAACTA AGGCACAAGA ATGCATCATC TCTTGTTAAT TAATTGGAGT 
    ACTACCAACC AAATAAGGCC AGACAATGTC AGATGCACGC ATCTTCTGTT 
    GTCGTTGGGC CATCTTTTGT ATGCATCCTA TTGTTAATTA CTAGTACATG 
    ATATCCAAGT GATCATCAGC AAGGCTACAG AAATTCTGTA ATACGATAAA 
    TTAAAAGAAA CCAAAATGGA GCCTGCATAT GTGTAACTTA ATTAATGTAC 
    TGGCGTATTA ATGCCACTGC TGCATGTTGT AATACTCCAT CAAAGAGTCT 
    ATTACTATTA AGTATTTAAA TTATC

    Gene models with high sequence identity

    1. AT4G35090.1 [+] show detail - catalase 2
      E-value: 0; Score: 762.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Catalase related subgroup 1.1e-180
    HMMPfam Catalase-related immune responsive 6e-20
    ProfileScan Catalase, N-terminal 74.711
    PatternScan Catalase 0
    PatternScan Catalase 0
    HMMPanther Catalase-like domain, haem-dependent 3.2e-266
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    FPrintScan Catalase related subgroup 8.4e-81
    superfamily Catalase-like domain, haem-dependent 4e-208
    Gene3D Catalase, N-terminal 8.4e-204

    See the detailed result >

    AT4G35090.1

    Model type
    Protein coding
    Short Description
    catalase 2
    Curator Summary
    Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
    Computational Description
    catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR