K14821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14821

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14821

Determination of introduced cDNA(s)

  • J023030D05 - Rice Full-length cDNAs - Original: J023030D05

    full reading [+] show sequence

    Nucleotide sequence: J023030D05 - full reading
    GATTCCCACT CTCTCCTCTT CCCGATCCCC CCAACACCCA AACCCTAACC 
    CTCGAAGCGA CGCAACCCAC CGGCGGCGAT GGGGCAGGGC ACTCCCGGCG
    GGATGGGGAA GCAGGGCGGC CTCCCCGGCG ATCGCAAGCC GGGCGACGGC
    GGCGCCGGCG ACAAGAAGGA CCGCAAGTTC GAGCCCCCCG CCGCGCCGTC
    CCGCGTCGGC CGGAAGCAGC GGAAGCAGAA GGGGCCCGAG GCGGCGGCGC
    GCCTGCCCGC CGTGGCGCCG CTCTCCAAGT GCCGCCTCCG CTTGCTCAAG
    CTGGAGCGGG TCAAGGACTA CCTCCTCATG GAGGAGGAGT TCGTCGTCAG
    CCAGGAGCGG CTGCGACCCA GCGAGGACAA GACGGAGGAG GACCGATCCA
    AGGTCGATGA CCTCCGGGGC ACCCCCATGA GCGTTGGCTC GCTTGAGGAG
    ATCATCGATG AGAGCCACGC CATCGTCTCG TCGTCCGTCG GGCCGGAATA
    CTATGTTGGC ATATTATCAT TCGTCGACAA GGACCAGCTC GAGCCAGGGT
    GTGCCATTCT GATGCATAAC AAGGTTCTCT CTGTGGTTGG AATTTTGCAA
    GATGAGGTTG ACCCTATGGT TTCTGTCATG AAAGTTGAAA AGGCACCTTT
    GGAGTCTTAT GCGGACATCG GTGGTCTGGA TGCCCAAATT CAAGAGATTA
    AAGAGGCTGT TGAGCTTCCC TTGACTCATC CTGAGCTATA TGAGGACATT
    GGAATAAGGC CTCCCAAGGG AGTAATATTA TATGGGGAAC CTGGCACAGG
    CAAAACTCTA CTTGCAAAGG CGGTTGCTAA TTCTACATCA GCAACATTTT
    TGCGTGTTGT TGGGAGTGAG TTGATCCAAA AGTACCTTGG TGATGGCCCC
    AAGCTTGTAA GAGAATTGTT TAGGGTGGCT GATGATCTTT CTCCGTCAAT
    TGTCTTTATT GACGAGATTG ATGCAGTCGG AACAAAGAGG TATGATGCTC
    ATTCGGGTGG AGAGCGTGAA ATTCAGAGAA CCATGTTGGA GTTGCTTAAT
    CAGCTGGATG GTTTTGATTC AAGGGGAGAT GTTAAAGTTA TTTTAGCAAC
    AAATCGCATT GAAAGTCTTG ACCCAGCTTT GCTTCGACCT GGTCGGATAG
    ACAGAAAGAT TGAATTTCCG TTACCAGATA TTAAAACCAG GAGGCGGATC
    TTCCAGATAC ACACATCTAA GATGACATTG GCAGATGATG TTAACCTAGA
    AGAGTTTGTG ATGACCAAGG ATGAGTTTTC TGGTGCTGAC ATCAAAGCAA
    TATGTACGGA GGCCGGATTG CTCGCTTTAA GGGAGCGCAG AATGAAGGTG
    ACACATGCCG ATTTCAAGAA GGCCAAAGAG AAGGTCATGT TCAAGAAGAA
    GGAAGGTGTA CCGGAAGGGC TTTATATGTG AGACATCCAC CACTCATCAG
    CACCAGAATT ACCTCCAGGA CACGGTTAAG TGTAATAGAG AACTGGTAGA
    GCTGGTGTTT GGTTCAATGT TCGGAGAATG TTTGCTTACA CCCTTCTTAT
    TCAGCAATGT CGAACTAAAG AACCCCCTG

    Gene models with high sequence identity

    1. AT4G29040.1 [+] show detail - regulatory particle AAA-ATPase 2A
      E-value: 0; Score: 750.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart ATPase, AAA+ type, core 3.6e-20
    HMMPfam ATPase, AAA-type, core 3.6e-40
    HMMTigr 26S proteasome subunit P45 2.2e-168
    superfamily P-loop containing nucleoside triphosphate hyd 3.4e-68
    PatternScan ATPase, AAA-type, conserved site 0
    Gene3D no description 2.7e-56
    Gene3D no description 1.1e-18
    HMMPanther 26S PROTEASE REGULATORY SUBUNIT 4 1.2e-240
    HMMPanther 26S PROTEASE REGULATORY SUBUNIT 1.2e-240

    See the detailed result >

    AT4G29040.1

    Model type
    Protein coding
    Short Description
    regulatory particle AAA-ATPase 2A
    Curator Summary
    26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,
    Computational Description
    regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR