K14822

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14822

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14822

Determination of introduced cDNA(s)

  • J033000K10 - Rice Full-length cDNAs - Original: J033000K10

    full reading [+] show sequence

    Nucleotide sequence: J033000K10 - full reading 
    GGTCTCGTCT TCTTCCGAGC GGCGAGGCGA GGGCGGCGTT GGCGACGGGC 
    GGTGGTCGTC TGGGCTTGGA GGAGAGGCCA CCGTGGCGGC AGCGAGCGGT 
    GGCCGGAGGA GCAGCGCTCG GGCGGGGACG AATCGACCCG GCGTGGCGGG 
    CGTCGTTCGG GAGCGTGGAG GCGGCGGGGC TTCGGCAACG TCCCGAGGTT 
    GCCGGCAGCG AGGTGGATCG GGGCGTACGG TGGGGAGGAA GAGGGAAGCG 
    GTGGTGGTCG GTGGAGGCCG GCATGTTGGG CGGCGCGGCT AGGCGAGGGG 
    GAGAGGAGGC TAGTGGCTAG CTCGCTCAGT GCGACTCTGA CCGCGGCACG 
    CGGCACGCGG GCTTTTACAG CCGCCATGAC CGCGAGGAGG GCGAGGACGG 
    CGTGGGACGG GGGCAGGTGG CTGTAGCGGC GTGCGACCGC ATGCACTGGC 
    GGCGGCGGGA GGCAACGGGG CGAGGAGTAG GGGCATGGGC TCGGTGCGAC 
    GCGGCGAGGC CGTCTTGGTC CGCGGGTATG GCGTGGACTT CTGGCGACGA 
    GGCGTTGCGG TGACGGCGGC TACAGTGGCG CGCCGGCTTT GAGGAGAGGC 
    GCGGTGGCTC GCTGCTCGGA CCGCAGCGGT GCGGCATTTT GTCGAGCAGG 
    TGGCGTGCGA GGGCGGCTGT CTCGGGGCAA GGCCGTGGGC TGGCTGAGAG 
    ATGTGGCTTA GGTTGAATAA TATGCCTTAG GATTGAGAAT TGGAGGGAAT 
    TCATTAGGTG TTAAGTTTGG ATTTTGATTT TGAATGGTTT CTAATTTTAG 
    AGGGGAGTGT GAGGATGTAT GAATTGAGAT CCTAACTGAA ATTTATCTTG 
    GGAGAACCTC TTGTTGATTA AAAAACAGAC AATATTTGTC TTTTGCAGGC 
    AGTTTCATAA GATGGTTTTA CTCCAGAAAA GAAGTTCTCT AAGCTGCCAT 
    CAGGAGGATT AAGGGAGCTC ATTGGTCAAG ATGGCATAGG CAGGAGCAAC 
    ATCATGGAAG CAGAAGGTAT TTTGAAAGAT CTGATTGATG ATAAGGTGAA 
    CAATGTTGAT GCCGAGTTGC ATGTCTTACA AGAAGAGCAT GAAAAAGGCC 
    TGCTCGAGCA TGACAGAACG GCCCAAAAGA AGAGGAGGCC CAGGAAATGG 
    GAAGCCCAAA GCCCAGATCA GATTGGCAAA CAGCAATAAA GCGGGGCGAA 
    TACCCCAGTT TCCCTCTCTC CCCCGCCGAG CCTTCGTCGT CAGCTGGTGT 
    TACCCCAGCT TGAATTCTCT GCAAGACAGC AAGTTCTTCC CTACTCCCTC 
    TCCACCCTGC GCAATTCCCT CGCATTCTCA TCCTACTCCA AGAGCAGAGG 
    AGGAAGGAGA TGGAGAGGCA GGACGGCGAC GCTGAGGGAT CGGGACGGGG 
    AGAGCATAGG AGCAGAGGCT GCCGTTCCCC GGCAGAGACC AAGACTGACC 
    GAAGCCCCGG CATTCCCAGA GTTCTGGAGG TGGGGTTCGC CACCGTGCGA 
    GAACACCACG GGACCAAGAG CACCACGGGA CCCCAAAAGA GCAACAACCT 
    CCAGAACAAG AAGATAAAAT CAAGAGAAGA TGGCAGAGAA CCGGAGGCCG 
    CAGAGTTGAG ACGGGGCGAG AGGAGAAGAG ACCACGAGGT GGTATTTGCC 
    GCTGCTGCGC GAGATCCACC TACACTGCAG CGCCCCGACT TCGACTGCGT 
    GCGTCAGAAC AAACATCCCA ATGCCAATAC TGAGAATGAG ATGACGGGCG 
    GTGATCTCGA GAAAGCAAGT GGAAGCTTAC TAGACCAGAG CAAGCAACCG 
    CTGAACATAA AGAGGGATCG TCGCAGGCTA GAAGAAGTCA GTGATAAAAT 
    GTGGAAGGAT GAAGCGAAGG AGATTGGAAG CAGGTCGCCA GCACTAACAA 
    AGGGGAGCAC GAAAGAGTCT CAGATGCTTC AGTCTCTCGA TGGCAAAGCA 
    AAAAACGCTC AGAAAAGAAG GAAAGATGCT AAGCAAGAAC TCCGCAGCAA 
    GATTCCAGGA GTGACACTGG TTTCTGATGA CTCACTGTTT GGGCAAGCAG 
    CTAATTACAT CGAAGACCTT GAAGGGACAT CACTTGACTT AGAAGGCTTA 
    TCTGGAACTG CCATGATCAG AAAAGTTCTT CCTGGTTCAA ATAAAATACG 
    AGGTGTTACC GCGCTTTTTG AGGCAGCGAG CAGACATATA ACAGAAGTTA 
    AAAAGAAAAA GAAAATTGCC CCTGAAGAAG TTGAAAAGGA ATTTCGTCCT 
    GGAGTTGATG CCCATGATGG CCGAGCTGGG AAAAAATTGA CCAACATGAT 
    TCCCATTCCT CATATTCCAA AAATAAATGG CGATATTCCT TCTGCCATTG 
    AAGCCTTTGC AGATCACCAA AGACTGCTTG ACAGGTTGGT GCTGTATGAT 
    CTGGCTGAAG TCAAGGTTAA AGGAGACAGG AATTGCCAGT TCCGAGCATT 
    GTCAGATCAA ATGTACCACA CCACCGAACA CCACAGGTTT GTTCGTCAGC 
    AAGTAGTGAA ACAGCTTGAG TCTTATCCTG AAATTTATGC GGGTTATGTC 
    CCTATGGATT ATAGGGAATA TCTGAAGAAG ATGACAGAGG ATGGAGAGTG 
    GGGTGACCAT GTTACGCTTC AGGCTGCTGC CGACTTGTAT GGTGTAAAGA 
    TAACCCTGCT GACATCATGC AGAGATACCT TTTACATTGA AGTTCTTCCT 
    GCTGACCAGA AACCAAAAGG AGAGATATGC ATTAGTTTTT GGGCTGAGGT 
    GCACTACGAT TCGGTATATG CAGAAAAAGC CAGTTGATCC AGTTCCGTTA 
    CAACCTAGTC GTCGGCGAGG AACTGCGACG CCCGGCGAGC AGGAAGAACT 
    TTTATTCTAG AGAATTGAGA GAAAAGCAGA AGGGGAGAGA GAGAGAGAGA 
    GAGAGAGAGA GAGATTGTTT TCTTACATTT TCAACTTGTA TATATACGCT 
    ACAGCAGCTG GAGATTTATA TAGTCAGCAC TCGTTTGCCC TCTGGGCCCC

    Gene models with high sequence identity

    1. AT5G03330.2 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 3e-60; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 7.5e-41
    ProfileScan Ovarian tumour, otubain 15.192
    superfamily Cysteine proteinases 2.2e-33
    HMMPfam Ovarian tumour, otubain 4.4e-19
    Coil coiled-coil 0

    See the detailed result >

    AT5G03330.2

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT5G04250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR