K14825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14825

Determination of introduced cDNA(s)

  • J013001J15 - Rice Full-length cDNAs - Original: J013001J15

    full reading [+] show sequence

    Nucleotide sequence: J013001J15 - full reading 
    GCCGTTCCGC GCATCGCTAC ACCCCAAAAA CCTCTCAAGC GCTCTCTCCC 
    CTCGCCTCGC CGCGCCGCTG CGTCGTCGGC GACGGGATCG TGGGCTCGTG 
    GAGAGGGCAC CGCCGCCGCC GTCGCCGCCG GACGGATCTA GCCGTCTACA 
    CCCCGCTCCC CGCCCTCTCT CTCGAGGCGA TCGCGCCGAG CTGAGCTGAG 
    GTGAGGGTGT AGCTTACTAT CATGGCGTCA GCCACTGGAG CGTCTGGATG 
    GCTGAGGGGT AAGGTGAAGG GTGTGACTTC TGGGGACTGT CTTCTCATCA 
    TGGGGAGCAC CAAGGCGGAT GTCCCGCCGC CTGAGAAGTC GATTACTCTG 
    TCATACCTCA TGGCCCCAAG GCTGGCTCGC CGTGGTGGAG TGGATGAACC 
    ATTTGCTTGG GAAAGCAGGG AGTTTCTAAG GAAACTCTGC ATAGGAAAGG 
    AGGTCACATT CAGAGTGGAC TACACAGCTC CAAATGTTGG ACGAGAATTT 
    GGTACTGTTT ACCTCGGTGA CAAGAATGTT GCCTACTCGA TAATTGCTGC 
    AGGATGGGCA AGGGTAAAGG AGCAAGGCCC AAAGGGCGGT GAACCGAGTC 
    CATATCTTAC TGAGCTGCTA AGGTTGGAGG AAGTTGCTAA GCAGCAGGGT 
    TTAGGTCGTT GGAGCAAGGA ACCTGGTGCT GCTGAAGAAT CAATAAGAGA 
    TCTTCCACCA TCAGCAATTG GTGAAGCTAG TGGTTTTGAT GCAAAGGGTT 
    TTGCAGTTGC GAATAAAGGC AAGAGTCTGG AAGCCATTGT TGAACAAGTT 
    CGTGATGGCA GTACAGTTCG TGTTTACTTG CTCCCAAGTT TCCAATTTGT 
    TCAGATATAT GTTGCTGGAG TTCAGTCTCC ATCCATGGGG AGGCGCCCAC 
    CGAATCCTAC AGTGGTGGCT GCAGCAGAGA GTACTGCTGA TGGCGCTACA 
    AACGGTGGAG ATTCTGAGGA AGCTCCAGCA CCACTGACTA CAGCCCAAAG 
    GCTTGCCGCA GCAGCGGTTT CTACTGAAAT TCCACCGGAC AGGTTTGGAA 
    TAGAAGCTAA GCACTTCACA GAGACGGGTT CTCAATAGAG ATGTGCGAAT 
    TGTGGTGGAA GGCACAGATA GTTTCAGCAA TATAATTGGC TCAGTGTATT 
    ACTCTGATGG GGATACATTG AAGGATCTGG CCCTTGAGCT TGTTGAAAAT 
    GGTCTTGCCA AGTATGTTGA GTGGAGTGCC AACATGATGG ACGTTGATGC 
    AAAAATAAAG CTGAAGAATG CTGAGCTTCA GGCTAAGAAG GACCAGTTGA 
    GAATTTGGAC AGGATTTAAG CCACCAGTGA CAAACTCGAA GCCAATCCAC 
    GACCAGAAAT TCACTGGAAA AGTTGTAGAG GTTGTGAGTG GGGATTGCAT 
    CATTGTTGCT GATGACGCAG CTCCTTACGG AAGTCCTTCT GCAGAACGCC 
    GGGTTAATCT TTCAAGCATT AGAGCTCCTA AAATGGGCAA CCCTCGTAGA 
    GATGAGAAGC CTGATAATTT TGCTCGTGAA GCCAAGGAAT TCTTGCGCAC 
    AAGGTTGATT GGCAAGCAAG TGACTGTTGA GATGGAATAC TCTAGAAGGA 
    TCAGCACTGT GGATGGACAG CCCACAACAA ACACAGCTGA TGCCAGGGTT 
    TTGGATTATG GGTCGGTTTT TCTTGGTTCA CCTTCGCAGG CTGATGGTGA 
    TGATGTTTCT TCCATTCCAA GCTCAGGCAA CCAACCTGGT ATCAATATTG 
    CTGAGACTCT GCTCTCAAGG GGCTTTGCTA GAACATCTAA ACATCGGGAC 
    TACGAAGAAA GGTCACACTA TTTTGACCTG CTGTTGGCGG CTGAATCACG 
    AGCTGAGAAA GCAAAGAAAG GAGTTCATTC TGCAAAAGAA TCACCTGTCA 
    TGCACATAAC AGACTTGACA ACGGTTTCAG CAAAGAAGGC CAGAGACTTC 
    CTTCCTTTCT TACAGCGGAA CAGAAGACAT TCCGCAATTG TTGAATATGT 
    CTTCAGTGGC CACCGTTTCA AACTAACAAT TCCTAAGGAG ACTTGCAGCA 
    TTGCCTTCTC TTTCACTGGT GTTAGATGCC CTGGTAAAGA TGAGCCCTAC 
    TCGAACGAAG CTATTGCTTT GATGAGGAGG AGAATTCTAC AGCGAGATGT 
    GGAGATAGAG GTTGAAGCAG TTGATAGAAC TGGGACATTC TTAGGTTCCT 
    TATGGGAGTC CAAAACCAAC ATGGCTTCTG TTCTTCTGGA GGCTGGTCTG 
    GCCAAGCTTA GTTCATTTGG CTTGGATAGG ATTCCGGATG CAAATGTTCT 
    AATGAGGGCT GAACAGTCTG CAAAGCAGCA GAAACTCAAG ATCTGGGAGA 
    ATTATGTAGA GGGTGAAGAA GTTTCCAATG GATCTGCATC TGAATCCAAA 
    CAAAAGGAAA TTCTCAAGGT TGTTGTAACT GAAGTCCTTG GTGGTGGAAA 
    GTTCTATGTC CAAACAGTTG GTGACCATAG AGTGGCTTCC ATTCAACAAC 
    AGCTTGCATC TTTAAAACTT AAAGATGCAC CTGTTATTGG TGCTTTTAAT 
    CCTGTGAAGG GGGAAATAGT TCTTGCTCAG TTTAGTGCTG ACAACTCCTG 
    GAATAGAGCA ATGATTGTGA ATGGACCTCG AGGAGCTGTA TCATCTCAAG 
    ACGACAAGTT TGAAGTATTC TACATTGACT ATGGCAACCA AGAAGTCGTT 
    CCTTACAGTC GCATACGGCC TGCTGACCCA TCAATTTCCT CTTCGCCTGC 
    TCTTGCTCAG TTGTGCAGCC TTGCCTTCAT AAAAGTGCCC AACCTAGAAG 
    ATGATTTTGG CCATGAAGCA GCAGTCTATC TGAATGATTG CTTGCTCAAC 
    AGCCAAAAAC AATACAGGGC AATGATTGAA GAGCGTGATA CTTCTGGTGG 
    AAAGTCCAAG GGACAAGGCA CTGGAACTAT TCTGATTGTT ACACTGGTTG 
    ACGCAGAGAC AGAAACCAGC ATCAATGCTA CCATGCTTGA GGAAGGGCTT 
    GCTCGGCTTG AAAGAAGCAA GAGATGGGAT ACTAGGGAGA GAAAGGCTGC 
    TCTCCAGAAT CTGGAACAGT TCCAGGAGAA AGCAAAGAAG GAAAGGCTGC 
    AGATCTGGCA GTATGGTGAT GTTGAATCTG ACGAGGAAGA GCAAGCTCCA 
    GCGGCTAGGA GAACTGGAGG GCGTCGGTAG ATGAGAGAAG GCTGCTCAAG 
    ACAGCAATGG CGTCGGTAAG CTATCATCAA GTTTTGGACA CCGGGTCAGA 
    CTCTACCGGG AGCTTTAGAT GAAAAACATA GAGAAAGAAA ATGAGGATTA 
    CCTTATTTAT GCAGTTAGAA CAGAACTTAG CGAGGCGAAA CTTCCTTAGT 
    TTGAGCACTG TTGCTTGATG CTGAACTATT ATTCCGTTTT ACACCGTAAT 
    GTTGAGGTTA AGATACATTG TTTTTCCCCT AAACTTAATA ATGTCGTGTA 
    CTTGGTGCAC TGCAGTTCTT TGTAGACACA ACATAATACC GAGAGCGCAG 
    TCAATTAAAA TTCAGGATTG AACTTAAAGA GGTATCCCAA GATTGCC

    Gene models with high sequence identity

    1. AT5G07350.2 [+] show detail - TUDOR-SN protein 1
      E-value: 0; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Staphylococcal nuclease (SNase-like) 0.0000000035
    HMMPfam Staphylococcal nuclease (SNase-like) 0.0000004
    HMMPfam Staphylococcal nuclease (SNase-like) 0.00000000000017
    HMMPfam Staphylococcal nuclease (SNase-like) 0.000000044
    HMMPfam Maternal tudor protein 4.4e-29
    HMMPfam Staphylococcal nuclease (SNase-like) 0.0000000000013
    HMMSmart Staphylococcal nuclease (SNase-like) 1e-16
    HMMSmart Staphylococcal nuclease (SNase-like) 8.1e-19
    HMMSmart Tudor domain 0.0000000086
    HMMSmart Staphylococcal nuclease (SNase-like) 2.9e-29
    ProfileScan Tudor subgroup 15.923
    ProfileScan Staphylococcal nuclease (SNase-like) 17.324
    ProfileScan Staphylococcal nuclease (SNase-like) 25.621
    ProfileScan Staphylococcal nuclease (SNase-like) 24.742
    ProfileScan Staphylococcal nuclease (SNase-like) 27.361
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 2.2e-28
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 3.6e-22
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 1.3e-17
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 0.0000000000025
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 3.5e-29
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 0.0000082
    Coil coiled-coil 0
    Gene3D Staphylococcal nuclease (SNase-like) 0.000015
    Gene3D Staphylococcal nuclease (SNase-like) 0.0000000000062
    Gene3D Staphylococcal nuclease (SNase-like) 2e-24
    Gene3D Staphylococcal nuclease (SNase-like) 1.6e-25
    HMMPanther EBNA2 BINDING PROTEIN P100 3.6e-256
    HMMPanther EBNA2 BINDING PROTEIN P100 0.000000015

    See the detailed result >

    AT5G07350.2

    Model type
    Protein coding
    Short Description
    TUDOR-SN protein 1
    Curator Summary
    RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
    Computational Description
    TUDOR-SN protein 1 (Tudor1); CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 (TAIR:AT5G61780.1); Has 1297 Blast hits to 805 proteins in 208 species: Archae - 2; Bacteria - 27; Metazoa - 772; Fungi - 182; Plants - 145; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR