K14825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14825

Determination of introduced cDNA(s)

J013001J15 - Rice Full-length cDNAs - Original: J013001J15

full reading [+] show sequence

GCCGTTCCGC GCATCGCTAC ACCCCAAAAA CCTCTCAAGC GCTCTCTCCC 
CTCGCCTCGC CGCGCCGCTG CGTCGTCGGC GACGGGATCG TGGGCTCGTG 
GAGAGGGCAC CGCCGCCGCC GTCGCCGCCG GACGGATCTA GCCGTCTACA 
CCCCGCTCCC CGCCCTCTCT CTCGAGGCGA TCGCGCCGAG CTGAGCTGAG 
GTGAGGGTGT AGCTTACTAT CATGGCGTCA GCCACTGGAG CGTCTGGATG 
GCTGAGGGGT AAGGTGAAGG GTGTGACTTC TGGGGACTGT CTTCTCATCA 
TGGGGAGCAC CAAGGCGGAT GTCCCGCCGC CTGAGAAGTC GATTACTCTG 
TCATACCTCA TGGCCCCAAG GCTGGCTCGC CGTGGTGGAG TGGATGAACC 
ATTTGCTTGG GAAAGCAGGG AGTTTCTAAG GAAACTCTGC ATAGGAAAGG 
AGGTCACATT CAGAGTGGAC TACACAGCTC CAAATGTTGG ACGAGAATTT 
GGTACTGTTT ACCTCGGTGA CAAGAATGTT GCCTACTCGA TAATTGCTGC 
AGGATGGGCA AGGGTAAAGG AGCAAGGCCC AAAGGGCGGT GAACCGAGTC 
CATATCTTAC TGAGCTGCTA AGGTTGGAGG AAGTTGCTAA GCAGCAGGGT 
TTAGGTCGTT GGAGCAAGGA ACCTGGTGCT GCTGAAGAAT CAATAAGAGA 
TCTTCCACCA TCAGCAATTG GTGAAGCTAG TGGTTTTGAT GCAAAGGGTT 
TTGCAGTTGC GAATAAAGGC AAGAGTCTGG AAGCCATTGT TGAACAAGTT 
CGTGATGGCA GTACAGTTCG TGTTTACTTG CTCCCAAGTT TCCAATTTGT 
TCAGATATAT GTTGCTGGAG TTCAGTCTCC ATCCATGGGG AGGCGCCCAC 
CGAATCCTAC AGTGGTGGCT GCAGCAGAGA GTACTGCTGA TGGCGCTACA 
AACGGTGGAG ATTCTGAGGA AGCTCCAGCA CCACTGACTA CAGCCCAAAG 
GCTTGCCGCA GCAGCGGTTT CTACTGAAAT TCCACCGGAC AGGTTTGGAA 
TAGAAGCTAA GCACTTCACA GAGACGGGTT CTCAATAGAG ATGTGCGAAT 
TGTGGTGGAA GGCACAGATA GTTTCAGCAA TATAATTGGC TCAGTGTATT 
ACTCTGATGG GGATACATTG AAGGATCTGG CCCTTGAGCT TGTTGAAAAT 
GGTCTTGCCA AGTATGTTGA GTGGAGTGCC AACATGATGG ACGTTGATGC 
AAAAATAAAG CTGAAGAATG CTGAGCTTCA GGCTAAGAAG GACCAGTTGA 
GAATTTGGAC AGGATTTAAG CCACCAGTGA CAAACTCGAA GCCAATCCAC 
GACCAGAAAT TCACTGGAAA AGTTGTAGAG GTTGTGAGTG GGGATTGCAT 
CATTGTTGCT GATGACGCAG CTCCTTACGG AAGTCCTTCT GCAGAACGCC 
GGGTTAATCT TTCAAGCATT AGAGCTCCTA AAATGGGCAA CCCTCGTAGA 
GATGAGAAGC CTGATAATTT TGCTCGTGAA GCCAAGGAAT TCTTGCGCAC 
AAGGTTGATT GGCAAGCAAG TGACTGTTGA GATGGAATAC TCTAGAAGGA 
TCAGCACTGT GGATGGACAG CCCACAACAA ACACAGCTGA TGCCAGGGTT 
TTGGATTATG GGTCGGTTTT TCTTGGTTCA CCTTCGCAGG CTGATGGTGA 
TGATGTTTCT TCCATTCCAA GCTCAGGCAA CCAACCTGGT ATCAATATTG 
CTGAGACTCT GCTCTCAAGG GGCTTTGCTA GAACATCTAA ACATCGGGAC 
TACGAAGAAA GGTCACACTA TTTTGACCTG CTGTTGGCGG CTGAATCACG 
AGCTGAGAAA GCAAAGAAAG GAGTTCATTC TGCAAAAGAA TCACCTGTCA 
TGCACATAAC AGACTTGACA ACGGTTTCAG CAAAGAAGGC CAGAGACTTC 
CTTCCTTTCT TACAGCGGAA CAGAAGACAT TCCGCAATTG TTGAATATGT 
CTTCAGTGGC CACCGTTTCA AACTAACAAT TCCTAAGGAG ACTTGCAGCA 
TTGCCTTCTC TTTCACTGGT GTTAGATGCC CTGGTAAAGA TGAGCCCTAC 
TCGAACGAAG CTATTGCTTT GATGAGGAGG AGAATTCTAC AGCGAGATGT 
GGAGATAGAG GTTGAAGCAG TTGATAGAAC TGGGACATTC TTAGGTTCCT 
TATGGGAGTC CAAAACCAAC ATGGCTTCTG TTCTTCTGGA GGCTGGTCTG 
GCCAAGCTTA GTTCATTTGG CTTGGATAGG ATTCCGGATG CAAATGTTCT 
AATGAGGGCT GAACAGTCTG CAAAGCAGCA GAAACTCAAG ATCTGGGAGA 
ATTATGTAGA GGGTGAAGAA GTTTCCAATG GATCTGCATC TGAATCCAAA 
CAAAAGGAAA TTCTCAAGGT TGTTGTAACT GAAGTCCTTG GTGGTGGAAA 
GTTCTATGTC CAAACAGTTG GTGACCATAG AGTGGCTTCC ATTCAACAAC 
AGCTTGCATC TTTAAAACTT AAAGATGCAC CTGTTATTGG TGCTTTTAAT 
CCTGTGAAGG GGGAAATAGT TCTTGCTCAG TTTAGTGCTG ACAACTCCTG 
GAATAGAGCA ATGATTGTGA ATGGACCTCG AGGAGCTGTA TCATCTCAAG 
ACGACAAGTT TGAAGTATTC TACATTGACT ATGGCAACCA AGAAGTCGTT 
CCTTACAGTC GCATACGGCC TGCTGACCCA TCAATTTCCT CTTCGCCTGC 
TCTTGCTCAG TTGTGCAGCC TTGCCTTCAT AAAAGTGCCC AACCTAGAAG 
ATGATTTTGG CCATGAAGCA GCAGTCTATC TGAATGATTG CTTGCTCAAC 
AGCCAAAAAC AATACAGGGC AATGATTGAA GAGCGTGATA CTTCTGGTGG 
AAAGTCCAAG GGACAAGGCA CTGGAACTAT TCTGATTGTT ACACTGGTTG 
ACGCAGAGAC AGAAACCAGC ATCAATGCTA CCATGCTTGA GGAAGGGCTT 
GCTCGGCTTG AAAGAAGCAA GAGATGGGAT ACTAGGGAGA GAAAGGCTGC 
TCTCCAGAAT CTGGAACAGT TCCAGGAGAA AGCAAAGAAG GAAAGGCTGC 
AGATCTGGCA GTATGGTGAT GTTGAATCTG ACGAGGAAGA GCAAGCTCCA 
GCGGCTAGGA GAACTGGAGG GCGTCGGTAG ATGAGAGAAG GCTGCTCAAG 
ACAGCAATGG CGTCGGTAAG CTATCATCAA GTTTTGGACA CCGGGTCAGA 
CTCTACCGGG AGCTTTAGAT GAAAAACATA GAGAAAGAAA ATGAGGATTA 
CCTTATTTAT GCAGTTAGAA CAGAACTTAG CGAGGCGAAA CTTCCTTAGT 
TTGAGCACTG TTGCTTGATG CTGAACTATT ATTCCGTTTT ACACCGTAAT 
GTTGAGGTTA AGATACATTG TTTTTCCCCT AAACTTAATA ATGTCGTGTA 
CTTGGTGCAC TGCAGTTCTT TGTAGACACA ACATAATACC GAGAGCGCAG 
TCAATTAAAA TTCAGGATTG AACTTAAAGA GGTATCCCAA GATTGCC

Gene models with high sequence identity

AT5G07350.2 [+] show detail - TUDOR-SN protein 1
E-value: 0; Score: 344.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Staphylococcal nuclease (SNase-like)	3.5e-09
HMMPfam	Staphylococcal nuclease (SNase-like)	4e-07
HMMPfam	Staphylococcal nuclease (SNase-like)	1.7e-13
HMMPfam	Staphylococcal nuclease (SNase-like)	4.4e-08
HMMPfam	Maternal tudor protein	4.4e-29
HMMPfam	Staphylococcal nuclease (SNase-like)	1.3e-12
HMMSmart	Staphylococcal nuclease (SNase-like)	1e-16
HMMSmart	Staphylococcal nuclease (SNase-like)	8.1e-19
HMMSmart	Tudor domain	8.6e-09
HMMSmart	Staphylococcal nuclease (SNase-like)	2.9e-29
ProfileScan	Tudor subgroup	15.923
ProfileScan	Staphylococcal nuclease (SNase-like)	17.324
ProfileScan	Staphylococcal nuclease (SNase-like)	25.621
ProfileScan	Staphylococcal nuclease (SNase-like)	24.742
ProfileScan	Staphylococcal nuclease (SNase-like)	27.361
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	2.2e-28
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	3.6e-22
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	1.3e-17
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	2.5e-12
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	3.5e-29
superfamily	Staphylococcal nuclease (SNase-like), OB-fold	8.2e-06
Coil	coiled-coil	0
Gene3D	Staphylococcal nuclease (SNase-like)	1.5e-05
Gene3D	Staphylococcal nuclease (SNase-like)	6.2e-12
Gene3D	Staphylococcal nuclease (SNase-like)	2e-24
Gene3D	Staphylococcal nuclease (SNase-like)	1.6e-25
HMMPanther	EBNA2 BINDING PROTEIN P100	3.6e-256
HMMPanther	EBNA2 BINDING PROTEIN P100	1.5e-08

See the detailed result >

AT5G07350.2

Model type: Protein coding
Short Description: TUDOR-SN protein 1
Curator Summary: RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Computational Description: TUDOR-SN protein 1 (Tudor1); CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), RNA-induced silencing complex, nuclease component Tudor-SN (InterPro:IPR016685), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071), Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Maternal tudor protein (InterPro:IPR008191); BEST Arabidopsis thaliana protein match is: TUDOR-SN protein 2 (TAIR:AT5G61780.1); Has 1297 Blast hits to 805 proteins in 208 species: Archae - 2; Bacteria - 27; Metazoa - 772; Fungi - 182; Plants - 145; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Link: InterPro Scan - TAIR