K14839

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14839

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14839

Determination of introduced cDNA(s)

  • J033046D12 - Rice Full-length cDNAs - Original: J033046D12

    full reading [+] show sequence

    Nucleotide sequence: J033046D12 - full reading 
    GATCGCTATT TCCAGTCCGA GGGAGAGGAG CGGCGACGAC AGGCGGCTCC 
    CCTCCAGCGC TGGCTCCGGC GAGCCCGCTC CTCCTTCCTC CAAAGAGTCC 
    TCCCTCCTCC CTCCGGTAAC AGGTTCCCCC CCCCCGTGCC GCCGCCCCGG 
    CATCACCGGC GCCGAAAGGC ATCAACGTGC CGGCGCGGCC CCGGCCGGCC 
    GGCCTCCTCC CCTTTGCCTC GCTTTGCTCC CGCTACGATC ACCGGCCGCC 
    CGCCCTTGTC CGCCACCCAC CGCCGGTCCG CCGCCTCCTA GGTCCTCTCT 
    CCAAACCCGA TCCCCCACTT CCCCCTCCCC AGCGCCGCCT TCCCCCACCC 
    CACCCCACGC CGTCGCTGTT CCTCCCCTCC CGGGCTCTTC CGCTCACCTC 
    TCCATCGCCT CGGTCTCGCA GCTTCCGCCT CAGTCTCCCC GACTTCCCGT 
    TGTCCGTCGC CAACCGAGGT GCCGAGCCAC TGCCGTCATT TGCCCTCCCG 
    TCTGCTCAAT CCACGGAGCG GCAGAGGGTC GAGGAACCGC CGCGACAAGG 
    CACCACGGCC ACCGCAAGGC AGACGCCGAG GCGCCATCGG CCGCTGGCAC 
    CGGGATCCCA TGACCCCTGA CCAGCCAGCT TAATTAATTT TGTGCTCTCG 
    AAAACTCGGA CTACTAAACG AAAAATTCCT AGCTACGCCA CTGCCTCCTG 
    CCCATTGCCA GAGGCGCGGC GGCGGCGGCG GCGGCGGGGG CGGCGAAGAG 
    TCCCGTGAGC GCCTCCTAGA TGGGGCTGCT CAGCATCATC CGGAAGATCA 
    AGCGCAAGGA GGAGGAGATG CGCATCCTCA TGGTGGGGCT GGATAACTCG 
    GGGAAGACGA CGATCGTGCT CAAGATCAAT GGGGAGGATA CCGGCGTCAT 
    CAGCCCCACC CTCGGCTTCA ACATCAAGAC CATCAAGTAC CACAAGTACT 
    CATTGAACAT ATGGGATATC GGTGGACAGA AGACTATCCG ATCTTACTGG 
    AGGAATTACT TTGAGCAAAC TGATGGACTA GTTTGGGTGG TTGATAGTTC 
    AGACATTAGG AGGCTTGATG ATTGCCGTGC TGAACTCCAC AATCTCTTGA 
    AAGAAGAGAG ACTAGCAGGA GCTTCATTGC TGGTGTTTGC AAATAAGCAA 
    GATATTCAAG GCGCTCTCAA ACCTTCTGAA ATTGCTAAGG TACTCAATTT 
    GGAAGCGATG GACGGAAGCC GGCACTGGCA GATCGTAGGC TGCAGCGCGC 
    ACACCGGGGA GGGCCTTCTT CAAGGTTTCG ATTGGCTCGT CCAAGACATT 
    GCATCTCGGA TCTACGTGCT AGAATGATGT GAACCTCGTT TCTCTGTAGT 
    ATTTATGTGC TGGAACGATT GAACCTCATT TCTTATCAAC CTCTTCGTCT 
    TGTTCTGTAA CGGTGAACTA TTGGCATCAT GATTTTTGAG CATGATGGTT 
    CTGTTTTGTG C

    Gene models with high sequence identity

    1. AT2G18390.1 [+] show detail - ADP-ribosylation factor family protein
      E-value: 4e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ARF/SAR superfamily 2.7e-70
    Gene3D no description 1.6e-57
    HMMTigr Small GTP-binding protein 1.8e-15
    FPrintScan ARF/SAR superfamily 3.4e-16
    FPrintScan ARF/SAR superfamily 3.4e-16
    FPrintScan ARF/SAR superfamily 3.4e-16
    FPrintScan ARF/SAR superfamily 3.4e-16
    HMMSmart ADP-ribosylation factor 5.2e-53
    HMMSmart Small GTPase SAR1-type 7.2e-18
    ProfileScan ARF 22.146
    HMMPanther ADP-RIBOSYLATION FACTOR-LIKE 2, ARL2 2e-111
    HMMPanther ARF/SAR superfamily 2e-111
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-46

    See the detailed result >

    AT2G18390.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor family protein
    Curator Summary
    Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.
    Computational Description
    TITAN 5 (TTN5); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: in 6 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 10006 Blast hits to 10000 proteins in 420 species: Archae - 13; Bacteria - 39; Metazoa - 4544; Fungi - 1627; Plants - 1505; Viruses - 3; Other Eukaryotes - 2275 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR