K14843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14843

Determination of introduced cDNA(s)

  • J013083M02 - Rice Full-length cDNAs - Original: J013083M02

    full reading [+] show sequence

    Nucleotide sequence: J013083M02 - full reading 
    GATCGCGCCC TTCTCTTGTC TTGTGAATCT GTGAGAACCC CGCATCCATG 
    GCGGCGGCGG CGGCGGCCTC CTCGGGCTGG CTCCGGCGAG CGGCGGGGAC 
    AGTCCCGCGC ATTCCATGCG GACTCGTGAC CGCACTCGTC CCGACCCCTC 
    CTCCACCCGC TGCTGCGGTG GTGTCCGAGG CCCCCGCGCT CGCGCTCCCT 
    TCCCACGCAG CCGTCGCCAT GGAGCTCATG GCTGTTCCCA AGAAGAAGGT 
    TTCAAAGTAT AAGAAGGGCC TGAGGAATGG GCCAAAAGCC CTGAAGCCTG 
    TTCCTGTAAT TGTCCGCTGC AAGTGCTGCG GTCGGGTGAA GCTGCCACAC 
    TTCTACTGTT GCAGCGGCGA AAGAGGGAAC CCTGGATCTG AGAGCTCGTA 
    ATATAGCCTT CAAGACTCTG AAGTCGAGAG TTCATAGCGG ATGCAGAGAG 
    GGGGAAAAAC ACCAGGACCC CATTCCAGTA AAATCAGTCA AGACTCCACT 
    ACCTGTCTCC TGAAATCAAA GCCATTTCTT CATCTATGTG AGTCCTGAAT 
    CAGTGTTTAA CTTTTGACTG CTTTTGTCAT TGGGTAATAA TAAGCGCTGG 
    AAGTCTTAGC TGATATCATG GTTGACAAAA AAGAAAAAAA AATATGCATA 
    TTGCTAGT

    Gene models with high sequence identity

    1. AT1G26740.1 [+] show detail - Ribosomal L32p protein family
      E-value: 7e-19; Score: 90.90

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Ribosomal protein L32p 11.118
    HMMTigr Ribosomal protein L32p 9.7e-05
    HMMPfam Ribosomal protein L32p 9.9e-10

    See the detailed result >

    AT1G26740.1

    Model type
    Protein coding
    Short Description
    Ribosomal L32p protein family
    Computational Description
    Ribosomal L32p protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L32p (InterPro:IPR002677); BEST Arabidopsis thaliana protein match is: Ribosomal L32p protein family (TAIR:AT1G69485.1); Has 123 Blast hits to 123 proteins in 51 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 21; Plants - 49; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR