K14846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14846

Determination of introduced cDNA(s)

  • J033121H12 - Rice Full-length cDNAs - Original: J033121H12

    full reading [+] show sequence

    Nucleotide sequence: J033121H12 - full reading 
    GGTCGTCACT CCTCGATTTT TCTCCCGCAA CTCACTGCGC CGCCGCGGAG 
    AGGCAAACCC GAAGGAGACT AGGAGAGGAA GAGCTTCACC GCCTCCGCCT 
    CCGGCAAGGA AAGCCAAAGC CAATCGAGGC CAAGAGCGAG GGGGAAGGAA 
    GAAGAGGGGG GAAGGGAGAG ATGCCGACGG TGACCTGCAA CGCGTGCAAC 
    GCGGGGTTCG ATGACGAGGA GCAGCAGCGC CTCCACTACC GCTCCGAGTG 
    GCACCGCTAC AACCTCAAGC GCAAGGTGGC TGGAGTTCCT GGAGTGACTG 
    AGGCTCTGTT TTTGGCTAGA CAAACTGCTT TAGCAGAGGG GAGCAACTCT 
    GATAGCACTC CAATGCTCTA CAGTTGTGCT CTTTGTGGAA AGGAGTACAG 
    GAGCTCAAAA GCTCATGCCC AACATCTTAA TTCACGATCA CATCTCATGA 
    AAGCTTCTCA GGAGCCTAAT GCATCCATTG CTGGAATTAC CATAGTCAAG 
    CCTCGTCCTG AGCGAGTTCA ACGCAGGGCT CCATCTGCAG TAGAAGAGGA 
    TGAAGATGAA GATGAGGAGG AAGAGTGGGT TGAAGTGGAC CCAAGTGAGT 
    TAGAGTCGAC TTCGGAAATG CAAGTAGATG AGCATTCCTC CAAATCAGAT 
    GATGAGATAG ATGAGTTTGA AGAGTTGGAT CCCACATTCT GCTTCATGTG 
    TGATCTTGAG CATGACACCA TTGAGAATTG CATGGTCCAC ATGCACAAAA 
    AGCATGGGTT TTTCATACCT GATAGCGAAT ACTTGAAAGA TCCAAATGGT 
    CTTCTTATAT ATGTTGGTCT GAAGGTGAAG CGTGATTTTA TATGCCTATA 
    CTGCAATGAC AGATGCCAGC CTTTCCAAAG TCTAGAGGCT GTGAGAAAGC 
    ATATGGATGC AAAAGGACAC TGCAAAGTAC GATATGGAGA TGGTGGGGAT 
    GATGAAGATG CTGACCTTGA AGATTTCTAT GATTACAGCA GCAGTTATGC 
    TGATGTGGAG GGTAAGGAGT TGGTTGCTGC AGATGACAAG GATAACATTG 
    AACTGGGAAG TGGTGGGGCT GAGCTTGTAA TAACGAACAA GAGTGAGAAA 
    GGAACTCGTG TCAGAACTCT TGGTTCTCGG GAATTTATTC GCTACTATCG 
    CCAGAAACCA CGTCCTTCTG TTGCAACAGA TCGTGCTCTT GCGCTTTCTC 
    TGGCTTCCAG CTACAAGAGC ATGGGTCTGG TGACAGTTCA GTCAAAGGAG 
    CAAGTTGTAA GGCTGAAAGT TCTCCGCGCA ATGAACAAGA CAGGTGTGGA 
    GACCATGCGA ACCAAGATTG GAATGAAGAG CAACGTGATC CGCAATCTCC 
    CCAAGAACTG CCCATATTAG TCGATGCCAC CTGTTGCAGG ATCAAAGCCC 
    TTGGAGCTCC AGCATCATCT TTGTGGCAAT GGCTGTTTTT TTGTGCATCT 
    GCTAGCCATG GCAGAGAGCT TGTGATATTC GCAAAAACAA TAGATCTTTA 
    TATTGTTTAA TTTGCACCTC AAATGAGAGT ATCATGCTTA CTGGAAACAA 
    GACTGTATCC GGTATAAGAG TTATGACTTC GGTAAACACA TCACCTTCTG 
    TGATTTTGAG C

    Gene models with high sequence identity

    1. AT4G31420.1 [+] show detail - Zinc finger protein 622
      E-value: 7e-119; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    PatternScan Zinc finger, C2H2-type 0
    ProfileScan Zinc finger, C2H2-type 8.829
    HMMPanther ZINC FINGER PROTEIN 622 3.3e-117
    HMMSmart Zinc finger, C2H2-like 47
    HMMSmart Zinc finger, C2H2-like 1.8
    HMMSmart Zinc finger, C2H2-like 100
    HMMSmart Zinc finger, C2H2-like 28

    See the detailed result >

    AT4G31420.1

    Model type
    Protein coding
    Short Description
    Zinc finger protein 622
    Computational Description
    Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR