K14850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14850

Determination of introduced cDNA(s)

J013088F16 - Rice Full-length cDNAs - Original: J013088F16

full reading [+] show sequence

GTGGTGGACG AGACGAGTGA GAGGAGGAGA GCGGCCATGG CGGGGCGGAG 
TGGCGGCGGC GGCGGCGGGA GCTCCGGGAA GAGCGGGACG GGGAGGATGG 
TGTCGCTGCA GGAGTTCGTC TCGTCCATGG CGCCTCTCAT AGACCTGGAG 
AAGGCGGCGG AGATATCGGC GGAGTCGGCG ACGAGCTCGA AGACCCTCGA 
GAGGAGGGGT TGCGTCATGG CCAACCTCAA GTGCACCGAC GCCCAGACGG 
GGCTGATGGG GAAGACGCTC CTGGAGTTCC AACCCAACAA GGGCGACGTG 
CTTCCACCTC ACAAGTTTGG AACACACGAT GTGGTTGCTC TGAAGCCAAA 
TAAGGCAGAT GCTGGATCTG CTGCTCTTGG GCAAGGTGTA GTTTATCGCT 
TGAAGGATTC TTCCATTACT GTTGCCTTTG ATGACATTCC TGAAGATGGA 
TTAAATAGCC CTCTCCGCCT TGAAAAGCTT GCAAATGAGG TGACATACCG 
CAGGATGAAG GATGCACTAG TTCAACTTAG TAAGGGCATT CAAACAGGCC 
CTTCAGCAAA CCTTATTCCT GTTTTGTTTG GAGAAAACCC ACCTATGAGT 
TCCAAGGATG TTGCGAAGTT CAGTCCATTT AACAAGAATT TGGATGAGTC 
ACAGAAAGAT GCTATCTCGA AGGCCCTCAG GTCAAGGGAT GTTTTCTTGC 
TTCATGGACC TCCTGGCACT GGGAAGACAA CAACTATCAT TGAGATAATA 
TTGCAGGAGG TGAAACGTGG ATCAAAGATT CTTGCTTGTG CTGCTTCTAA 
CATCGCCGTG GATAACATTG TTGAGCGACT CTCCCGATAT AGAACCAAAT 
TGGTGAGGTT AGGCCATCCT GCTCGATTAC TACCCCAAGT GTTGGACAGT 
GCTCTTGACG CACAGGTATT GCGAGCAGAT AACAGCAGCT TAGCAGGAGA 
TATTCGCAAA GAAATGAAGG TGCTTAATAG CAAATTGCTG AAAGCTAAGG 
ATAAGAATAC AAAAAGGGAC ATCAGGAAAG AGCTCAGAAC CCTTGCCAAA 
GAAGAGAGAA AACGACAACA GCTTGCTGTT GCTGATGTGA TAAAAAATGC 
AGATGTTGTA CTGTCGACTT TGACTGGTGC ATCTTCCAAA AAGCTAGATG 
GTATTACATT TGATTTGGTC ATTATTGATG AAGCTGCTCA GGCACTTGAG 
ATGGCATGTT GGATAGCCTT ATTGAAGGGT CCAAGATGTG TGCTTGCTGG 
AGACCATCTT CAACTTCCTC CGACTATCCA AAGTGCTGAG GCTGAGAAGA 
AGGGGATGGG AAAGACACTC TTTGAACGCC TTACTGAAGC TTATGGAGAT 
CAAATTACAT CCATGCTCAC TATCCAGTAC AGAATGCATG AGCTCATAAT 
GAATTGGTCA TCTAAAGAAC TTTATAATAA CAAGATCAAA GCTCATTCTA 
GTGTTGCTGA TCATATGCTC TATGACATTG AAGAAGTGAA AAGATCTTCT 
TCCACAGAGC CGACTATCAT ACTAATTGAC ACTACTGGGT GTGACATGGA 
AGAAGTAAAA GATGAGGAGG AGAGCACTAT GAATGAGGGT GAGGCTGCAG 
TATCCATTGC TCATGCCAAG CTGCTTGTTG AGAGTGGTGT CCGTGCATCT 
GATATTGGAA TAATTACACC TTATGCTGCA CAGGTAACCT GTCTGAAGAT 
GATGAGAAAC AAAGATACTA AACTGAAGGA CTTGGAGATA TCGACAGTTG 
ATGGGTTCCA GGGTAGGGAG AAAGAAGCCA TCATCATTTC AATGGTCAGA 
TCCAACTCAA AGAAAGAGGT CGGATTCTTA AGTGATCATA GACGAATGAA 
TGTTGCTGTA ACACGAGCCA GAAGGCAGTG CTGCCTAGTG TGCGATGTAG 
AGACCGTAAG CAACGACAAA TTCTTGAAAC GCTTGGTTGA GTACTTTGAG 
GAGAACGGGG AGTACTTGAG TGCATCAGAA TACCAGAGCT GATGACTTGG 
GGTGTTAACC CTTAACCGTG ATAGCCCGTG CTTATCGCAA AGATAGTGAA 
GAGATATATC CAAACGATGC TTGTGATAGG AACATCGTGC ACTTCAAACT 
GGTGCAATAT GGCCAATGGA GATACTGTCA TTCGACTTTT ATAGATTGGA 
AACAGATCGC TGTGAGACTG AACAGATAAT TAGCTCAGGA GTGGATCAAT 
TTCGTCTTGA CTGGCCCTGT TCTGGTCTCT TCTTCTGTGG CTTATGGAAA 
TGAAACCTCA GTTATGTGTT TTTATATGTC CGTTCTTTCA ACTGATGTAC 
AATGATAGAA GACTAATTTT ATTCATCCAT GTGCAAATCT ACCATAGTTT 
TTTGCATGGA GTTTTGAAAC TTGGGTCCAC AAAAATAGTA ATAATAGGAT 
AGGAGGTTGA CTGTACTGAA CTTCGCATGA TAATTAATCT GTATCTCATC 
C

Gene models with high sequence identity

AT2G03270.1 [+] show detail - DNA-binding protein, putative
E-value: 0; Score: 916.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	DNA helicase, putative	2.1e-167
superfamily	P-loop containing nucleoside triphosphate hyd	1.5e-36
HMMSmart	DEAD-like helicase, N-terminal	0.000044
HMMSmart	ATPase, AAA+ type, core	0.0000069
HMMPanther	DNA-BINDING PROTEIN SMUBP-2	2.7e-190
HMMPanther	DNA2/NAM7 HELICASE FAMILY	2.7e-190
Gene3D	no description	0.00034
HMMPfam	Restriction endonuclease, type I, R subunit/Type III, Res subunit	0.00000046

See the detailed result >

AT2G03270.1

Model type: Protein coding
Short Description: DNA-binding protein, putative
Computational Description: DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink).
Link: InterPro Scan - TAIR