K14926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14926

Determination of introduced cDNA(s)

  • J033036L15 - Rice Full-length cDNAs - Original: J033036L15

    full reading [+] show sequence

    Nucleotide sequence: J033036L15 - full reading 
    GACTCCAGTC CCGTCCCGTT TCCTTGCTGC CCGGCCGCCT GCCCCTCAAC 
    CTCATCGCGC AATCTCCATC ACCGTCCGGC GTCCGCGAGC AGCGGTGCAG 
    AGGGCGTCCT TACTCGTTCC GCGCGCCCCG CCCAGGTCAA TCTCCCCGTA 
    CCCTCAGCCT CGACTCTCTG AGTCTCCACG CGATCGACTT CGCCCGCAGC 
    CTGCGCCGAC CCTCTCGATC TCCATCCATC CCACGAGGGG AGCACCGGTG 
    GGTGCCGTCG TCCTCCGGTG AGCACCACGA CGCACATCCT TTTTCTTTAT 
    GGTTCATCCC TATCGTTCTA CCCTATCTTC TCTTCTAGAT CTGAAAGCTT 
    TTCTCTTTGT CTTAACCTTA GTACTAACAA CAACAGTTCT TCCCCCAAAA 
    AGAATTTAGG GGGTTCATGT CCCTGTTGGT ACACGATGAA CCCTGCAAGC 
    CGAAGACATT ATGATTCTCT CGTCGCGCGA TATGGTGACC AAGATGCACT 
    CGCCGACCGT TTCGGCGGCC AAAACGACGG CCCTGACGCC TGGTGGTCCA 
    ACCTGCGTGT GCGGATGTCT CAGGATCATC TACTGAGGCA CGAGGCGCGG 
    AGGCGAGCCG CCACCTTGGA GGTTTTCGAG GATAGAGAAA ACTCGCATGA 
    TGGTGCCTTT GGTTGCGGTG ACCGGGCCTC TGCTAAGGCC ATGGTAACTC 
    TGCATCAGCC CAATTTGGGC GAGACCAGGG AGCAGGATTG CGCCGTGTGC 
    CTTGAGCCTT TCGAGGAAGG CAATACGCTT AGAATGATGC CATGTTTCCA 
    TTCCTTCCAT CAGCGCTGCA TCTTCAGTTG GCTCCGCATT AGCCGCATCT 
    GCCCGGTGTG CCGTTTCACG CTGCCCTCCC AGGCTGATTT TGAGTCGGAG 
    AAGGCTGAGA AAGAACGAGT TAGTGCTTCA CCTGAAGATG GCAATAACTG 
    ATTGATGAAG ATCAATCTGC TTAGTGAGTT ACTTTGCTTG TGTCCTGTCT 
    CACAATTGAG TTGATCTTAT TTATGCTTCA TGGTTGATAT ATTTATCATC 
    TAAAGATGGC AGCAATTGTC CTGCTCCACT TAAATATTCT TGGTAGATAT 
    ATTTATTAGA GTAAATTTCA GAACATTCTG TGTTTTGTGG TCTTAATTGC 
    ATAATGCTCC GGATATTATG GCATGTAGCA TATAACCCTA GTCATTATGG 
    TATCAAGGTT TCGCAAAACC CAGCATTCAC TCAAATCATA AAAAAAACAA 
    CTTGTTGACA CATATTCACT TCATTTTTCA TGCCATAAAC CACTATGTAT 
    TGTTCAAATG TTGGTTACTT GATCAGGATG ACCAGTTTAA TCAGTCAACG 
    TTTTGAACAT TATTATGTCA AGGATGGTAA AATTAGCTGA AATTTGAACT 
    AGGATGGATT TTATGATACT TCTAGGTTAT AGAGCATAGG GTTATGTGCC 
    TCGAGTCATA ATATCCGGAG GTTTATGCAA CTTTGACCGC AAAATGTGGT 
    TTTTTGTGAA ATTTACTCTG ATTAGAGTAG ATTTCAGAAC ACCATGTAAG 
    TTTATTTATG GGATTGTCAA TCATAAACTT TGTTGTTTGA TCCAATATAC 
    TTCAAGGAAG AATATTTATC TCCCGTCTAA TGAAAAATTA GAAGC

    Gene models with high sequence identity

    1. AT5G56340.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-14; Score: 77.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 13.079
    Gene3D no description 1.9e-13
    HMMPanther RING FINGER PROTEIN 24-RELATED 3.2e-17
    superfamily RING/U-box 1.4e-15
    HMMSmart Zinc finger, RING-type 6.8e-08
    HMMPfam Zinc finger, C3HC4 RING-type 8.6e-09

    See the detailed result >

    AT5G56340.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    ATCRT1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR