K14927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14927

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14927

Determination of introduced cDNA(s)

  • J013047J07 - Rice Full-length cDNAs - Original: J013047J07

    full reading [+] show sequence

    Nucleotide sequence: J013047J07 - full reading 
    GAATCCTCCC CGATAGCCGA AGCCGAAGCC GAAGCCGCCC TGCTCTGACA 
    CCTCGATTCA CCCCGCCTCG CCGCCGGCCA CCGCCGCCGC AGATCAGGCG 
    GCTCCAGCGG GCGGTAGGGC TCCTCCTGTA GGAGGAGTTG GTGGGTACCG 
    TCGCGTTCTT CTTTCCCCTA GCTAGGTCTC GCCAGAAGGA GGAGGAGGCG 
    GTGGCTGCGG CGCGGTCGCC ATGGAGGCAT ACAAGCTCTG GGTGCGCAAG 
    AACCGGGACC TCGTCCGCTC CCTCGAGTCG TTGGCCAATG TAAACCGTAA 
    CCTCTGATCC CCAATCGAAT CGACTGTTTC CTTTTGTTTG GGGGGGGGGG 
    GGGGGGTCTG GAGCTTCGGG AGTTCGTGAT CCGTAGTTCG TTGTGTGGAG 
    CTCGTCGGTC CGGAGGGAGC TCTTGTTGGG GGTTTGTAGG GGGGGTGTGG 
    GTTTTGGTTG GAATCGACTG AATTGGGGCG CCGTGGTGGC TGACTGGGAG 
    TTGGAGCTGG GGCCAGCTGG GTTTTGGGCG AATTCGTGTG GTTTGTGCTG 
    TCTCTTGTCG AGCACAACAT GAGAGGGTTA ATTCAACTTC GTTATTTTCC 
    TGCAAATTTT CATCTTGATT CAATGATTCT ATTCCAGTGT CATGGAATTT 
    GGTTAGAGGG GTGCAGATTT ATTGTAATAA CATTACTTGA ATCGTACCAG 
    GATATCACTC ATCTGAAGTA TTTTTATCAG GGGCTAACGT GGATACTTCC 
    TGAGCGCTTT GCCAACTCTG AGATCGCACC AGAAGCAGGT TCGGTAAATG 
    ATCTTTTAGT AGAAGTAACA TTTAGCATCA CTACATCACT ATTTGATATG 
    CTTGCTGCTT TGTCTTGTGC TTCACCTTTG AGCCACACTA ACGTGTTATA 
    TTTGCAAGCG CAAAACGCTA TTTCCATATC ATGTGTTATT CAGATGAAAA 
    ATAGGGTACA AGTATCTTGG CATGGTAACT GGTATTTTTG GATGCTAGAA 
    AGTATAGTAT ATTGGAATAA ATATTATCTA AGATGTAGAC GTTGTATATC 
    TAATGAGTTT TGAGATGATG GATACTCAAA TGTCAGTTTG GGCGTTATGT 
    TTTGACATGT GATGCACAGT GGCCATTACC ACATGATGCA TGTGACTGAA 
    TATTGATATG CCCATGGTTC CATCGCCAAG TACTGTTCTC TAGAATGATA 
    TCTAGTTACA CATAATTTTC CAACTTTGTA TTGTGTCTGG GTGTTAGCAT 
    AACTGCTTCT TGTTTGTATG TTTGTGTAAC CACTCTCCTA GGTCTTGGAT 
    AACACATGCC GTGAAGCTGG AAGAAATCAT TAGCCTTTTG TGGATCAGGC 
    AAAGATTGTG ATCAATATCG TTGACACAAA AATACTCCAT TATATGTTGC 
    TTCTGACCAT CTTCTAGTCG TTGAACATTG TTAACTATTT AGTGCTAATA 
    CGATCACTGC TTACTAGATT TGGCCTTTTG TGTCATATAG AGGAAACAAA 
    CATGGTTCTT ACTATCATCT CGTTATTTAT TTATGCAAAT TATTAAGTAT 
    ACGACCTTGT ATTAAGTAAA AAAGCTGGAC ACCTGTTCCT TGTATACGGC 
    CTTGTAGACA AATTCTTATA ACAATAACAC TGAAAAAACC TTGAGTTATA 
    CCGAAAGGAT ATGTAAGTGT TTTGCCGATA CTATTATAAT TTTCTTTGCA 
    TCACAAGGTG ACAGTCTTCA GCCACAAAAT CTTGAGTATG TTCACATTCT 
    GAAAAGATAT GTAACTGTTT TGACGATACT ATTCTCCGGC GAACTTGTAT 
    TGTTAAATGC ACTGGCAGTA AAACTATTCA TTGCTAACTT AGGAATATGA 
    GTACCTTCCA GTTTTGTTAT TATTCCAAAT CAAACCATTA TAGGGCCTAG 
    CTCTTTAATT TTGCTAAGGT TTTCCCAAGG ATACTTTATG CTGTACGAAA 
    CAAATCAACA CTTGTTCACT TTGCAAACAC ATGATAGATT GTTCTTGGGC 
    ACTGTTTTCT TCTCTTACTT AAATGATGTA TTTTGAGTGT TACAGGCTTG 
    ATCATTTCAC ATTAAGACAT CTTTTTTTTC CTGAACAGTA TATGCATTTC 
    TGGGTATCGT GAGTTCTGTC AATCAGCACA TAATTGAAAC GCCAACTGAT 
    GGTCAGACAT TGGCCTCCAA AGAGCAATCT ATCCCATGGT CCCTTGTTGT 
    CTCAGTACTT AAGGATATTG AGGCAGTTGT TGAGGTGGCT GCCCAGCACT 
    TTGTTGGAGA TGATCGCAAA TGGAGCTTTC TTGCTGTTAC AGAAGCTGTG 
    AAAGCAGGTG TCAGGTTAGC TGCTTTCGGG GAGAGTGGCT ACAAGATGCT 
    CTTACAAGGA GGAGAGGTGG CAAATGAAGA GGAGATTAAT ATTCTTGATG 
    AAAATTTTGG AGCCAAAAGT AATGGAGTAC CAGTCATTTA TCCGATGAAT 
    GGCCATTTCC AAAATGGTCA TGGGGTTGCA TCTAATGGTC TTGATGGAAA 
    GGCTGGATTT GTATCAAAGA GTCTGGAGGG AAGAGCTGTA GCTGCTCTTA 
    ACAAGTTTGG CCAGAATGCA AAGATGACGT CAGATCCCAT GTGGATGAAG 
    AAGGCTCTGC CTCCTCCTGA TCCTCCTGCG ATGGTGGTTG AGAAGCCAAC 
    TTTGGCAAGT ATTTGGTCTG CTAAAGGAAT TTCAGGGCGG TTATTTTTGT 
    TAGGAGAAGT TGTCCACATA TTCAGACCAC TGCTATACGT ACTTTTGATC 
    AAAAAATTTG GAATCAAATC ATGGACCCCA TGGTTAGTGT CATTAGCTGT 
    GGAGATCACA AGTCTTGGCA TCCATTCACG TGCAACTGAT CTTCATCAAA 
    GAGGGGGAAA AGTTCATCAG CTCTCATCTG CTGAGAGGGA CGAGTTGAAA 
    AGGCGAAAGA TGATGTGGGC CCTTTATGTC ATGAGAGATC CATTCTTTAC 
    CAGATACACC AAGCGCCATC TCCAGAAGGC TGAGAAAGTG TTGGATCCAG 
    TGCCTCTTAT TGGTTTCCTT ACAGGCAAAC TCGTAGAGCT AGTGGAGGGG 
    GCTCAGACAC GATATACATA CACATCGGGC TCATAAGGAT AATGGACAAG 
    CAGGCAGATG TCATGTCTGA GAGTTTCCTT AACGATTTGC CATGATTAAC 
    CTTTTGTGGT TCATGTGATC TGGTTGATGG GTTTTGTTTT GAGCTTGATC 
    CTAATCCTAT CTGTACATGC CATTTCCTTA GCAAGATTTG GCATTCCTAC 
    CTGATGTCTT GGGGCTGCAA AGCTGTTGCG GCCACTGTAA ACTCTCCTCT 
    CTCCTCTGGT GGCAGCTCAG CTGAGAATCT AACTATACTA TAGTATATCG 
    GTGTAATATT AAGAATAGGC ACATCATCCC TGCAACGATA CCGTGTATTT 
    ATTTACCAAT TACCATGCAG GACATACTGG AACCCAGAAC AAGTCCAAGA 
    GAAAATTGCT TGGGTTTTTC ATGATTCTGT TGATTCTGTG TTGCAATCT

    Gene models with high sequence identity

    1. AT2G45690.1 [+] show detail - shrunken seed protein (SSE1)
      E-value: 1e-74; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 3.3e-52
    HMMPfam Peroxisome membrane protein, Pex16 3.7e-47

    See the detailed result >

    AT2G45690.1

    Model type
    Protein coding
    Short Description
    shrunken seed protein (SSE1)
    Curator Summary
    Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica.
    Computational Description
    SHRUNKEN SEED 1 (SSE1); CONTAINS InterPro DOMAIN/s: Peroxisome membrane protein, Pex16 (InterPro:IPR013919); Has 261 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 93; Plants - 47; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR