K14928

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14928

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14928

Determination of introduced cDNA(s)

  • J013091K05 - Rice Full-length cDNAs - Original: J013091K05

    full reading [+] show sequence

    Nucleotide sequence: J013091K05 - full reading 
    GCTTCGCGCC GCCACTCTCT CCGAGCTCTC GCCTCTCCTC CTCCCCCGTC 
    TTCCCTTCGC GCGCGCCACC CCCACACACG CGACCATGGC GGCAGTGGCA 
    GGAGGCGCAG CGCGGGCGCT GTCGCAGGCG GAGCAGGACG TGCAGATGAT 
    GCTCGCCGCC GACGTCCACC TCGGCACCAA GAACTGCGAC TTCCAGATGG 
    AGCGCTACGT CTACAAGCGC CGCTCCGATG GTATCTACAT CATCAACCTC 
    GGCAAGACAT GGGAGAAGCT GCAGCTCGCG GCGAGGGTGA TTGTTGCCAT 
    TGAGAACCCC CAGGACATCA TTGTCCAGTC GGCCCGCCAT TGCTGGAAGG 
    CATACGCCTG GTACATTTAC CAATCAGCTC CAGACCTCCT TCAGCGAGCC 
    CCGTCTGCTC ATCCTCACTG ACCCAAGGAC CGATCACCAG CCAATCAAGG 
    AGTCTGCTCT GGGAAACATC CCGACCATTG CCTTCTGTGA CACCGATTCC 
    CCAATGCGGT ATGTCGATAT CGGCATCCCG GCCAACAACA AGGGGAGGAA 
    CAGCATTGGG TGCCTGTTCT GGCTCTTGGC TAGGATGGTT CTGCAGATGA 
    GGGGTACTAT CCTCCCTGGC CACAAGTGGG ATGTTATGGT TGATCTGTTT 
    TTCTACAGAG ACCCTGAGGA GGCCAAGGAG CAGGAGGAGG AAGCTCCAGC 
    ACAAGACTTT GCTGCCATCA CTGATTACAC CGCACCTGAA CAATGGTCTG 
    CTGACCAGTG GACCTCTGAT GTGGCTGCTC CCCCAGCTGC TACTGTTGGT 
    GATTGGGGCG CAGCTCCAGC TCCAGTTGCT GCTGCCGAAG GATGGGATCA 
    AGCAGGAGCA CCCGTAGCCA CTGAAGCCGC CGTCGTTCCA CCGGTTGCGC 
    CTACTGGATG GGACCCGGCA GCTCAACCAG CTGCTCAAGG CTGGGATTAG 
    GCTAGGCAAT CACTTTGAGA TGTCTTCCGC AGCTTAAGTT AAATATTTCC 
    CGAGGCATGA ATGAACACCC AAAATCCAAT GTGATCATCT ATAGCTACAC 
    CATGAACTCA ACTGTTTTTA GGAATTTCTA GCTGAACCTG TGTTGTTTGT 
    CCGTCCCTAT TTCGAACAAC AATGCTGTGA GGGTGAGCTC GGCAAGATGT 
    GTGGTATATG TTAAGCTTTC TACTTTTGTC CT

    Gene models with high sequence identity

    1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
      E-value: 3e-86; Score: 124.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S2, conserved site 0
    HMMPfam Ribosomal protein S2 0.0000000000014
    HMMPfam Ribosomal protein S2 6.9e-20
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 1.4e-57
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 1.4e-57
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 2e-106
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 2e-106
    superfamily Ribosomal protein S2 9.2e-22
    superfamily Ribosomal protein S2 4.5e-36
    FPrintScan Ribosomal protein S2 0.0000095
    FPrintScan Ribosomal protein S2 0.0000095
    FPrintScan Ribosomal protein S2 1.4e-18
    FPrintScan Ribosomal protein S2 1.4e-18
    FPrintScan Ribosomal protein S2 1.4e-18
    FPrintScan Ribosomal protein S2 1.4e-18

    See the detailed result >

    AT1G72370.1

    Model type
    Protein coding
    Short Description
    40s ribosomal protein SA
    Curator Summary
    acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
    Computational Description
    40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR