K14932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14932

Determination of introduced cDNA(s)

  • J033081J05 - Rice Full-length cDNAs - Original: J033081J05

    full reading [+] show sequence

    Nucleotide sequence: J033081J05 - full reading
    GACGAGTGGT GTTTTCTGGT CACCTGCGGC AGCCGTCGTG GTCCGTGAAA 
    CGAAACCCCT GTCTTTCGTC CGCGAAAATT TTCCATTCTT GCGCTTCCAA
    GTATCGAGCC CCAACTTCCT AGAAGACCGC GAACCCTAGA AGCAAGAGAC
    CAAGAGTCGA GGAGGAGGAG GAGGAGTTGG CCGGAATCCC CGTGTGGAAG
    GTTGGGATGA TTTTATGAAG TATGGGTTGT TCAAAGACAC AGACTCAGGA
    AGACTCTGAA TTCAATCAAT GCAATGAAGA GCGCTCCCTG TGCTTACACT
    CATTTTCTGA CTTGTCACAT GTTTCTGCAG CTACTTTTAT GTATCTTTTG
    AAGGACTGCT ACCTATATGG AACTGACAAA GCAACCCCAA AGTTCAAGAT
    CCTTCAGCTG CAGGTTAAAA GGGTATTAAA TAATGATCCT CAGCCAGGCC
    CATTCACGTA TGTTGTTCAA TGCATGTATA TTGTGCCACT GCTGGGGAAA
    ACCCATGCTG AAGGCTTCAG CCATATGTTG ATCTCTTCTC TAAGGCATTT
    GAAATCTGTG GAATCTGTAC AGAAAGATTT CTTAGATGCA AAGCATCTTG
    CTGCGCGACT TATTCTTGAT ATTGTTGCTT CTATTGTGCC CCATGAGGAA
    CGCATACTGA TAAAGCTTCT CGAGGCATAT GATATCGAGT TGAGAGATAT
    GGCTGATGCA TTATATGGTT CAGAGTTGGG TGATGAAGAT CTAGTGAAAG
    CAAAAGAACA TCTCAAACAG TATGTACAAT GCTTAATGGA ATCAGAATCT
    TATGTGACCG CTGTGAACCT GATAACACGA TTTTCTATTC AATGTTATGA
    TGAGTCCTTT CTTACAAAAC TGATTGAAAA TAATCACTTG GAGGCAGCAG
    AGAAGTGGGC AGTTTTCATG GGGAATGAAA TGATATGTTT GATCATCCAA
    ACGTATCTGG ATATAAAAAT GCTAAAGAGG GCAAATGAGT TGGTAAAACA
    ACATGACCTT ACAGAAAAGT TCCCAGATGT TAACTATTTG TATAAAGAGA
    GTGTACTGAA GAAGCTGGCT GAGAAAGGGT GCTGGGATAT TGCAGAGGTT
    CGGGCCAAGA AGGAAACAAA ATTGATGGAA TACCTGGTAT ACCTAGCTAT
    GGAAGCTGGG TACATGGAGA AAGTTGAAGA ACTTTGCCAA AGATACTCTC
    TTGAAGGCTA TGTCAATTCT TTGGGTAATC ATAAACACCA ACGTTATTTA
    TCATACATTA ATATCTGTAG TCCTGCAGTT CCAGAGGAGA TTTGTTGTGG
    GTCTGACTAC TTAGATCTTA AAGAACTGAT TTTGGAAGAC ATTATCTGGG
    TTGATGAGAT TGATGGACTT CTTAATTCAA TAAGTTATAT TGAAGCTTGT
    AAAATTATTG GTGTGGATTG TGAATGGAAG CCTAATTTTG AGAAAGGTAG
    CAAACCTAAT AAGGTCTCTA TTATCCAAAT TGCGTCAGAT AAGAAAGCTT
    TTATTTTTGA TCTGATCAAG CTGTATGAAG ATGACCCAAA AGTGTTGGAT
    AGCTGCTTCA GGCGAATTAT GTGTTCTTCA AACATACTAA AGCTAGGATA
    TAATCTGCAA TGTGATCTGC ATCAACTATC ACAATCATAT GGAGAATTGA
    AATGTTTCCA GTCCTATGAA ATGCTGCTTG ATATCCAGAA GCTCTTCAAA
    GGGACTACTG GTGGTCTATC TGGGCTGTCC AAGAAAATAT TAGGAGCTGG
    TTTGAACAAG ACGCGACGGA ATAGCAACTG GGAACAGCGC CCTCTCACCC
    AGAATCAGAA AGAGTATGCT GCCCTTGATG CTGTGGTCCT TGTTCATATA
    TTCCATCACG TCAAGGGACA GCCTCAGTTT GGTGTCACCG AGGGATGCAA
    AGTGGAATGG AAGTCCCATA TTGTTTCTCG GGTGAAGAAT TCACGGAGTA
    CATTACGCTT CTAAAATTAA GGGCTGATCA AAGTTGACTG TGGACGTAGT
    ATCTTGCTAA AGTGTTAGCC AGGAAGAAGT TAAGAATCAA TCTGTTCATA
    TCTTTCTCAC ATCTTACATG ATCTCAGCAG CTGTTGCTGC CATCTGTAAA
    TATTATATGC TCAGATTTCT TCCATGTTGT GTTATCGCTA ATTAGGAGCT
    ATGAGCCTAT GACAGTTCAG GCATGCATCT TTTTGGTGGC AATGGACTTT
    ATTATCAGGA AGC

    Gene models with high sequence identity

    1. AT1G56310.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 3e-139; Score: 493.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 3-5 EXONUCLEASE 1.2e-19
    superfamily Polynucleotidyl transferase, ribonuclease H fold 4.8e-29
    HMMSmart 3'-5' exonuclease 0.00000019
    HMMPfam 3'-5' exonuclease 5.7e-22

    See the detailed result >

    AT1G56310.1

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033092J19 - Rice Full-length cDNAs - Original: J033092J19

    full reading [+] show sequence

    Nucleotide sequence: J033092J19 - full reading
    GGGGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
    GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT
    GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG
    CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT
    CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA
    TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC
    CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA
    ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT
    GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACGATG GAGTGGATAT
    TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG
    ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG
    AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA
    ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC
    AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC
    TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG
    CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG
    TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA
    GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG
    ATGTTATTAA GTTAAAATAT TTACTTTCTG CCAGCTCGTT

    Gene models with high sequence identity

    1. AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
      E-value: 5e-89; Score: 324.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S8e 9.3e-57
    PatternScan Ribosomal protein S8e, conserved site 0
    HMMPfam Ribosomal protein S8e/ribosomal biogenesis NSA2= 1.2e-51
    Coil coiled-coil 0
    HMMPanther 40S RIBOSOMAL PROTEIN S8 1.2e-152
    HMMPanther 40S RIBOSOMAL PROTEIN S8 1.2e-152

    See the detailed result >

    AT5G59240.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S8e family protein
    Computational Description
    Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR