K14932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14932

Determination of introduced cDNA(s)

J033081J05 - Rice Full-length cDNAs - Original: J033081J05

full reading [+] show sequence

GACGAGTGGT GTTTTCTGGT CACCTGCGGC AGCCGTCGTG GTCCGTGAAA 
CGAAACCCCT GTCTTTCGTC CGCGAAAATT TTCCATTCTT GCGCTTCCAA 
GTATCGAGCC CCAACTTCCT AGAAGACCGC GAACCCTAGA AGCAAGAGAC 
CAAGAGTCGA GGAGGAGGAG GAGGAGTTGG CCGGAATCCC CGTGTGGAAG 
GTTGGGATGA TTTTATGAAG TATGGGTTGT TCAAAGACAC AGACTCAGGA 
AGACTCTGAA TTCAATCAAT GCAATGAAGA GCGCTCCCTG TGCTTACACT 
CATTTTCTGA CTTGTCACAT GTTTCTGCAG CTACTTTTAT GTATCTTTTG 
AAGGACTGCT ACCTATATGG AACTGACAAA GCAACCCCAA AGTTCAAGAT 
CCTTCAGCTG CAGGTTAAAA GGGTATTAAA TAATGATCCT CAGCCAGGCC 
CATTCACGTA TGTTGTTCAA TGCATGTATA TTGTGCCACT GCTGGGGAAA 
ACCCATGCTG AAGGCTTCAG CCATATGTTG ATCTCTTCTC TAAGGCATTT 
GAAATCTGTG GAATCTGTAC AGAAAGATTT CTTAGATGCA AAGCATCTTG 
CTGCGCGACT TATTCTTGAT ATTGTTGCTT CTATTGTGCC CCATGAGGAA 
CGCATACTGA TAAAGCTTCT CGAGGCATAT GATATCGAGT TGAGAGATAT 
GGCTGATGCA TTATATGGTT CAGAGTTGGG TGATGAAGAT CTAGTGAAAG 
CAAAAGAACA TCTCAAACAG TATGTACAAT GCTTAATGGA ATCAGAATCT 
TATGTGACCG CTGTGAACCT GATAACACGA TTTTCTATTC AATGTTATGA 
TGAGTCCTTT CTTACAAAAC TGATTGAAAA TAATCACTTG GAGGCAGCAG 
AGAAGTGGGC AGTTTTCATG GGGAATGAAA TGATATGTTT GATCATCCAA 
ACGTATCTGG ATATAAAAAT GCTAAAGAGG GCAAATGAGT TGGTAAAACA 
ACATGACCTT ACAGAAAAGT TCCCAGATGT TAACTATTTG TATAAAGAGA 
GTGTACTGAA GAAGCTGGCT GAGAAAGGGT GCTGGGATAT TGCAGAGGTT 
CGGGCCAAGA AGGAAACAAA ATTGATGGAA TACCTGGTAT ACCTAGCTAT 
GGAAGCTGGG TACATGGAGA AAGTTGAAGA ACTTTGCCAA AGATACTCTC 
TTGAAGGCTA TGTCAATTCT TTGGGTAATC ATAAACACCA ACGTTATTTA 
TCATACATTA ATATCTGTAG TCCTGCAGTT CCAGAGGAGA TTTGTTGTGG 
GTCTGACTAC TTAGATCTTA AAGAACTGAT TTTGGAAGAC ATTATCTGGG 
TTGATGAGAT TGATGGACTT CTTAATTCAA TAAGTTATAT TGAAGCTTGT 
AAAATTATTG GTGTGGATTG TGAATGGAAG CCTAATTTTG AGAAAGGTAG 
CAAACCTAAT AAGGTCTCTA TTATCCAAAT TGCGTCAGAT AAGAAAGCTT 
TTATTTTTGA TCTGATCAAG CTGTATGAAG ATGACCCAAA AGTGTTGGAT 
AGCTGCTTCA GGCGAATTAT GTGTTCTTCA AACATACTAA AGCTAGGATA 
TAATCTGCAA TGTGATCTGC ATCAACTATC ACAATCATAT GGAGAATTGA 
AATGTTTCCA GTCCTATGAA ATGCTGCTTG ATATCCAGAA GCTCTTCAAA 
GGGACTACTG GTGGTCTATC TGGGCTGTCC AAGAAAATAT TAGGAGCTGG 
TTTGAACAAG ACGCGACGGA ATAGCAACTG GGAACAGCGC CCTCTCACCC 
AGAATCAGAA AGAGTATGCT GCCCTTGATG CTGTGGTCCT TGTTCATATA 
TTCCATCACG TCAAGGGACA GCCTCAGTTT GGTGTCACCG AGGGATGCAA 
AGTGGAATGG AAGTCCCATA TTGTTTCTCG GGTGAAGAAT TCACGGAGTA 
CATTACGCTT CTAAAATTAA GGGCTGATCA AAGTTGACTG TGGACGTAGT 
ATCTTGCTAA AGTGTTAGCC AGGAAGAAGT TAAGAATCAA TCTGTTCATA 
TCTTTCTCAC ATCTTACATG ATCTCAGCAG CTGTTGCTGC CATCTGTAAA 
TATTATATGC TCAGATTTCT TCCATGTTGT GTTATCGCTA ATTAGGAGCT 
ATGAGCCTAT GACAGTTCAG GCATGCATCT TTTTGGTGGC AATGGACTTT 
ATTATCAGGA AGC

Gene models with high sequence identity

AT1G56310.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
E-value: 3e-139; Score: 493.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	3-5 EXONUCLEASE	1.2e-19
superfamily	Polynucleotidyl transferase, ribonuclease H fold	4.8e-29
HMMSmart	3'-5' exonuclease	1.9e-07
HMMPfam	3'-5' exonuclease	5.7e-22

See the detailed result >

AT1G56310.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033092J19 - Rice Full-length cDNAs - Original: J033092J19

full reading [+] show sequence

GGGGAGAGCG AGGCACAGCT ACCGGCGGCG CAGCCACACA GCAGCAGCAG 
GTGAGGAGGA GAGGAGACCC GCCGCCGCCG CCGCCATGGG TATCTCGCGT 
GATTCCATGC ACAAGCGCCG CGCCACGGGC GGCAAGCAGA AGGCATGGCG 
CAAGAAGCGA AAGTATGAGC TCGGAAGGCA GCCTGCCAAC ACCAAGCTGT 
CAAGCAACAA GACAGTGAGG AGGGTGCGTG TCCGTGGAGG TAATGTGAAA 
TGGAGGGCCC TCCGTTTGGA TACTGGCAAC TACTCATGGG GAAGTGAGGC 
CGTGACCCGC AAGACCCGTA TCCTTGATGT GGTCTACAAT GCATCCAACA 
ATGAGCTTGT CAGGACTCAG ACCCTTGTAA AGAGTGCTAT TGTGCAAGTT 
GATGCTGCCC CCTTCAAGCA GTGGTACCTC ACTCACGATG GAGTGGATAT 
TGGTAGAAAG AAGAAGGCTC CTGCAGCCAA GAAGGATGCT GAGGGGCAGG 
ATGCTGAAGC TACCACAGAG GAAGCGAAGA AAAGCAACCA TGTTGTCAGG 
AAGCTTGAGA AGCGCCAACA GGGACGCACA CTTGACGCCC ACATCGAAGA 
ACAGTTTGGC AGTGGGAGGT TGCTGGCCTG CATTTCTTCC CGCCCTGGGC 
AGTGTGGCCG AGCAGATGGC TATATCCTTG AGGGCAAAGA GCTGGAATTC 
TACATGAAGA AGCTCCAGAG GAAGAAGGGC AAGGGTGCCT CAGCTTAGAG 
CAAGTCTTTC TTTGTTGCTG GTTCTACACT GAAAGAACTA CCCTTTTTTG 
TTCCCTGAGA GCTCCTATGT TATGTTTGCA GACGCATAGC TGTTTTTTTA 
GGATTAAACA ACTTTAGCAT GATGACATGA GAATGGGTTA TGTACTCTGG 
ATGTTATTAA GTTAAAATAT TTACTTTCTG CCAGCTCGTT

Gene models with high sequence identity

AT5G59240.1 [+] show detail - Ribosomal protein S8e family protein
E-value: 5e-89; Score: 324.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Ribosomal protein S8e	9.3e-57
PatternScan	Ribosomal protein S8e, conserved site	0
HMMPfam	Ribosomal protein S8e/ribosomal biogenesis NSA2=	1.2e-51
Coil	coiled-coil	0
HMMPanther	40S RIBOSOMAL PROTEIN S8	1.2e-152
HMMPanther	40S RIBOSOMAL PROTEIN S8	1.2e-152

See the detailed result >

AT5G59240.1

Model type: Protein coding
Short Description: Ribosomal protein S8e family protein
Computational Description: Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR