K14942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14942

Determination of introduced cDNA(s)

J033110A17 - Rice Full-length cDNAs - Original: J033110A17

full reading [+] show sequence

GGTGCTTACT CATGGGCTCA TGGCGTTCGT GTCTGAATTA ACCAACGCAA 
AATAAACACG AGTCTGCTGA GACACTGCTC ACTGCTTACT TTACTCATGG 
CTCAGCGGCG GCTGCTACTC GCCATCATGG CTCTCGCCGC CGTCGCCGCC 
GCCACCGGCT TCGAGTTCCA CGAGGCCACC GTCGACGCCA TCCAGCTCGG 
CTTCAGCAAC GGCAGCCTCA CCTCCACGGC GCTCGTCCGC TTCTACCTCG 
ACCAGATCAC CCGCCTCAAC CCGCTCCTCC ACGCCGTCAT CGAGGTCAAC 
CCCGACGCGC TCGCCCAGGC GGCGCGCGCC GACGACGAGC GCGCCACCGG 
TCGCCGCTGC GGGCCGCTCC ACGGCGTCCC CGTCCTGCTC AAGGACAACA 
TCGCGACACG CGACCGGCTC AACACGACGG CCGGGTCGTT CGCGCTGCTC 
GGCTCCGTCG TCCCCCGCGA CGCCGGCGTG GCGGCTCGCC TCCGCGCCGC 
CGGCGCCGTT ATCCTCGGTA AGGCCAGCCT CACCGAGTGG TCCGCTTACC 
GCCCCGCCCC GAACGGCTGG AGCGCCCGCG GCGGCCAGAC ACTGAATCCG 
TACGTGCGCT CGTTCACCCC GTGCGGATCG AGCAGCGGTT CGGCGGTGGC 
GGCGGCGGCG AACATGGCGG CGGTGACGCT GGGGACGGAG ACCGACGGGT 
CTATACTGTG CCCAGCGTCG CTGAATTCGG TGGTCGGGAT TAAGCCGACG 
GTTGGGCTCA CCAGCCGCGC CGGCGTCGTC CCCATCTCCC CTCGACAGGA 
CAGTGTTGGG CCAATATGTC GGACAGTGTC GGATGCTGTC CATGTGTTGG 
ATGCCATTGT TGGGTATGAT GCACTTGACG CTGAAGCCAC TGGAGCAGCA 
TCCAAGTACA TTCCTAATGG TGGATATGGA CAATTCTTAA GGATGGATGG 
ATTCAAAGGC AAGAGGATTG GTATTCCCAA CGGCTTCTTC ACTCAAGAAA 
TATTTGAGAA GAAACAGCTG AGGGCATACC AAAAACATAT TCAATTAATG 
AGGAAACATG GAGCCATGGT GATTGAGAAC ATCGACATCG CAAAAAATCT 
GACTGAAGTA CAGAATGTTC TTTTTTCCAA CGAGCATATC GCAATGATAG 
CAGAGTTCAA GTTAAGCTTG AATGCTTATT TGTCCGACTT GTTGTATTCC 
CCAGTTCGTT CCCTTGCAGA TGTCATAGCA TTCAACAAGG CACATCCGGT 
GGAGGAGAGG CTTAAAGATT TTGGACAACC CTATTTTATT GAAGCCGAAA 
AGACCAACGG CATTGGACCG GTGGAGAAAG CTTCAATCCA ACATCTCAAT 
AAGCTGTCTG CTGATGGGCT GGAGAAGTTG ATGAGGATGC ACCAGTTGGA 
TGCGATTGTC ACGCCCAATG ACAACGGGAG AGTCTTCTTC GCCGTCAGTG 
GCATGCCAGC GATCACCGTG CCGGCTGGGT ACGACAGTCA AGGAGTGCCA 
TTTGGTACTT GCTTCGGTGG ATTGAAGGGC TATGAGCCAA GGCTGATTGA 
AATGGCCTAT GCTTATGAGC AAGCTACCAA AGTTCGAATG ATGCCTGGCT 
TCAAGATGTA GTGTATATAA AATTTGTGTT ATATAATTCA CGGAGCTTTT 
TGATCCTTGC CCAAATAAAT TGATGGAACT AAATAGCCAT CTAGTTTTGT 
TGTCCAATTC AGGGATGCCA AAAATTTGGT AGTCCAGAGT ATTATATGTT 
CAATGTATTA TAATAATTTA TAATTCAAAA ATTAAATATC TGGT

Gene models with high sequence identity

AT4G34880.1 [+] show detail - Amidase family protein
E-value: 1e-116; Score: 417.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Amidase	0
Gene3D	Amidase	1.90000694315261e-102
superfamily	Amidase	7.80005155399507e-104
HMMPanther	PTHR11895:SF8	0
HMMPfam	Amidase	1.29999999999998e-72

See the detailed result >

AT4G34880.1

Model type: Protein coding
Short Description: Amidase family protein
Computational Description: Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT5G07360.2); Has 15395 Blast hits to 15313 proteins in 2409 species: Archae - 237; Bacteria - 9126; Metazoa - 385; Fungi - 509; Plants - 293; Viruses - 0; Other Eukaryotes - 4845 (source: NCBI BLink).
Link: InterPro Scan - TAIR