K15019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15019

Determination of introduced cDNA(s)

J023132I18 - Rice Full-length cDNAs - Original: J023132I18

full reading [+] show sequence

GTTGGGGAAG TCGCGTGGCG GTTAGCTAGT GGAGTTACCA ACCCAACCCG 
TGTCCCCTTG TCGGATCCGG GCGCGCGACC TCGTCGCCGG CCGGCCGGAT 
CGCCGCCGCC GCCGCCGTAG AGATGGACCC GGAAGCGGTG CGGAGGAGCC 
TCGAGCCCAC CGCCTTGTCC AAGGAGGTCG TCGGCCCCGC CTCCGCGAGC 
CTGCGCTACG ACGCCTTCGC CCTCACCGGC GTCCGCATCG ACGCGGCCGA 
GCACGGCCGC CTCCTCTGCT CCTTCGTCGT CACCCCGCGC ATCGCCAGCC 
CGGCGGGGTA CCTCCTCAGC GGCGTCACGG CGACGCTCGC CGACCAGCTC 
GGGTCGGGCG TGTTCCTCTC CAGCGGGATC GGGACGAGCG GTGTCTCGCT 
CGAGCTCAAC CTCTCCTACG TCGACGTGGC CAGCATCGGG GAAGAAATAG 
AGGTTGAGGG AAAGCTGTTG CGCGCTGGAA AATCAGTCGG TGTTGTCTCT 
GTTGATTTCA GGAAGAAAAA GACAGGCAAA TTGATAGCGC AGGCCCGCCA 
TACCAAGTAC CTCGCTGTAT CTAGCAAACT ATGAGGTTTT CCTAGATACC 
AAAATGATCA TGTCAAACTC TTTACTATCT AGACCTTGTC ATACGCTGTC 
AGTGCTGTAT ATTGTTCTAA AATAGGATCG TGTCCATCTC AAACGCATAG 
ATTGATGGCG GTTCTGTTAT TTATATTGCT TAGGTCAATT CCTATTGGGA 
ATGAAGGGAT TTCACAGAAA ATGGGGGTAA ATCCTCCTAA ATTCATACCC 
AACTCTTCAG TTATACAAAC AGGACCTCAG AAATTACGCA ACTGGAAAAT 
AAGAGTAGTT AAGTACTCAA ATCAGATTGC ATTTGTGCC

Gene models with high sequence identity

AT1G04290.1 [+] show detail - Thioesterase superfamily protein
E-value: 4e-31; Score: 132.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Thioesterase superfamily	8.4e-11
HMMTigr	Phenylacetic acid degradation-related protein	9.2e-12
superfamily	Thioesterase/thiol ester dehydrase-isomerase	2.5e-20
HMMPanther	THIOESTERASE SUPERFAMILY MEMBER-RELATED	2.9e-31
Gene3D	no description	3.4e-12

See the detailed result >

AT1G04290.1

Model type: Protein coding
Short Description: Thioesterase superfamily protein
Computational Description: Thioesterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT2G29590.1); Has 964 Blast hits to 962 proteins in 292 species: Archae - 38; Bacteria - 286; Metazoa - 202; Fungi - 157; Plants - 213; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link: InterPro Scan - TAIR