K15049

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15049

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15049

Determination of introduced cDNA(s)

  • J033134F19 - Rice Full-length cDNAs - Original: J033134F19

    full reading [+] show sequence

    Nucleotide sequence: J033134F19 - full reading 
    GCTTTTCGAA ACGCGCAAAA ACCCTCTCCG ACTCTCCCCT TCTCCCACTC 
    TTCTCCGGCG GCGGCGGCGG CGGCGGCGGG AGCGCATCGG AGATGATCAT 
    CCCGGTGCGG TGCTTCACCT GCGGGAAGGT GATTGGGAAC AAGTGGGATC 
    TGTACCTGGA TCTCCTCCAG GCTGACTACA CAGAGGGGGA TGCTCTGGAT 
    GCATTGGGTT TGGTCCGTTA CTGCTGCCGG CGAATGCTCA TGACCCATGT 
    TGACCTCATC GAGAAGTTAC TCAACTACAA CACGCTGGAG AAGACCGAGA 
    CAGCAGGTTA AGTTGACCCA GCATGCTCCA GAACTCTTGT TCCTTATTGC 
    CTTTGTTCAC GAATGTTCCA AGGAATTTGT GTGATGATCC ATGCTGCATT 
    TCAACTATGT AACTGTTACC GTGATGTCAG ATGATGGAAG TGATATAACT 
    AGTGGGCAGA GTACCTCTGG TTGTGTGTGA ACTTGTTTTC AAGACTTTTA 
    TATCAAGGGG GGTATGTTCC TGCAGTAATT TTCTT

    Gene models with high sequence identity

    1. AT1G61700.1 [+] show detail - RNA polymerases N / 8 kDa subunit
      E-value: 2e-33; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RNA polymerases, N/8kDa subunit 4.9e-40
    HMMPanther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RN 4.9e-40
    PatternScan RNA polymerases, subunit N, zinc binding site 0
    HMMPfam RNA polymerases, N/8kDa subunit 2e-30
    BlastProDom RNA polymerases, N/8kDa subunit 2e-17
    superfamily RNA polymerases, N/8kDa subunit 1.8e-27
    Gene3D Homeodomain-related 5.1e-27
    HAMAP RNA polymerases, N/8kDa subunit 19.058

    See the detailed result >

    AT1G61700.1

    Model type
    Protein coding
    Short Description
    RNA polymerases N / 8 kDa subunit
    Curator Summary
    Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.
    Computational Description
    RNA polymerases N / 8 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G11475.1); Has 943 Blast hits to 943 proteins in 326 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 71; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR