K15101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15101

Determination of introduced cDNA(s)

  • J013009O17 - Rice Full-length cDNAs - Original: J013009O17

    full reading [+] show sequence

    Nucleotide sequence: J013009O17 - full reading
    GTCTCCATCC ATCGCCGCCG CCGCGCGCCG CCGCGTGAGC CGCCGGGGGG 
    CGGGCATTGG ATTGGACTTG GGGGCTAAAA GCAGCAGTTT CTTGTTTTTA
    CTTCCTGGAG AAAGTGACGA TTTTGGTTAT TAAGCCAGTC GCTGGATTAC
    GAGGAGGAGA GGGGATAGAT AGTTTGTGTC AGACGATGAT GATGCCGCTG
    CGTTGCCTCT CCGAGCTGGC CCGCCGTCGC CGCGGCTGCT GCCGGCCTGA
    TCACGCGGTT GATGCGATGA GAGCTGGGCT CCAATGTTTG ATGAGCACTT
    GCTCCTCAAC CAAAGCTACT GATAATCATA GTTTCTCCAA CACATATGCA
    ACTTCTTGTG CTAATTTGCC AGAGGTAGCA CCAAGCGAGG CGCCACTGTC
    AGACATGCTC GTCGATTCAT TCGGGAGATT TCACAACTAC CTGAGGATCT
    CCTTGACAGA GCGCTGTAAT CTGAGATGCC AGTACTGCAT GCCTGCAGAA
    GGAGTTGAGC TCACGCCAAG CTCAGAGCTC CTGTCGCACG ACGAGATCAT
    TCGAGTTGCC GATCTTTTTG TTACTTCTGG TGTGGATAAG ATCCGGTTGA
    CTGGTGGAGA ACCAACCATT AGAAAGGATA TTGAAGATAT CTGCTTACAT
    CTTTCTGGCT TGAAGGGACT GAAAACTCTT GCGATGACCA CGAATGGGCT
    TGTTCTTTCT AAGAAGCTCC CAAGATTGAA AGAGTGTGGG CTCAATGCTC
    TAAATATTAG TTTGGACACG TTGGTCCCTG CAAAGTTTGA GTTCATGACA
    AGGCGTAAAG GGCACTCCAG AGTCATGGAA TCGATAGATG CTGCTATTGA
    ACTTGGATTC CAATCTGTCA AGGTCAACTG TGTTGTCATG CGTGGAATGA
    ATGATGATGA GATCTGTGAT TTTGTTGAAA TGACGAGAGA CAAGCCTGTC
    AATGTCAGAT TTATTGAGTT TATGCCGTTT GATGGTAATG TTTGGAATGT
    CAAGAAGTTG GTTCCTTATG CAGAGATAAT GGATAAAGTG CGCCAACGTT
    TTAACGGTGT AGAAAGACTT CAAGATCATC CGTCAGAGAC GGCGAAGAAT
    TTCAAGATTG ATGGTCATGC TGGAACAATT TCGTTTATTA CATCGATGAC
    ACAGCATTTT TGTGCTGGTT GCAATAGATT ACGATTATTG GCTGATGGCA
    ACTTGAAAGT GTGCTTGTTT GGCCCGTCTG AGGTGAGCTT GAGAGAGCCT
    ATCCGAGCTG GTGTTGATGA TGCTGGACTC AGAGAAATAA TAAGCGCTGC
    GGTTAAAAGG AAGAAAGCTA AACACGCTGG GATGTTTGAT ATTGCTAAGA
    CAGCAAATAG ACCTATGATT CACATTGGTG GCTGAGATCA GTTTTACCAG
    CTGAAAGTAC CTTGGCTCCT CCGTACGACG ACTGTGACGA ACTATCAACA
    TGATAAAAAA ACAAAACAAA GATTTACATG ATCTTACCTT GATATGATGG
    TAAAGTGAGG AACTCAAAAC TTCAAAGGGC AATACATACA GTTTGTTCAA
    GATATAAAAA TGTTACTTGT GAAATAGTAG CAGTTGCAAA CCTCAGGCAG
    TTGAAAGTTG AAGCATATCT GTACTTTTCG CTACTTGTAC GAGAAAGATG
    TATCTGTTGT ATGATGTAAT GATGTAATGA TGTATGCTCC TCATAAATCA
    TAATGCTAAT GTGTAGCTAA CTATTCTTTT GTGGCATCTT ACCGGTTAAT
    AAAACGAAAT TATTGCATTT TTCT

    Gene models with high sequence identity

    1. AT2G31955.2 [+] show detail - cofactor of nitrate reductase and xanthine dehydrogenase 2
      E-value: 3e-163; Score: 572.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Elongator protein 3/MiaB/NifB 0.000000011
    PatternScan MoaA/nifB/pqqE, iron-sulphur binding, conserved site 0
    HMMPfam Molybdenum cofactor synthesis C-terminal 1.6e-34
    HMMPfam Radical SAM 1.4e-27
    superfamily Radical SAM enzymes 4.9e-79
    HMMPanther MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 1.3e-103
    Gene3D Aldolase-type TIM barrel 0.0000000000056
    HMMTigr Molybdenum cofactor biosynthesis protein A 2.1e-139

    See the detailed result >

    AT2G31955.2

    Model type
    Protein coding
    Short Description
    cofactor of nitrate reductase and xanthine dehydrogenase 2
    Curator Summary
    COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria.
    Computational Description
    cofactor of nitrate reductase and xanthine dehydrogenase 2 (CNX2); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor synthesis C-terminal (InterPro:IPR010505), Aldolase-type TIM barrel (InterPro:IPR013785), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Molybdenum cofactor biosynthesis protein A (InterPro:IPR013483), Radical SAM (InterPro:IPR007197), MoaA/nifB/pqqE, iron-sulphur binding, conserved site (InterPro:IPR000385); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR