K15104

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15104

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15104

Determination of introduced cDNA(s)

  • J013159I18 - Rice Full-length cDNAs - Original: J013159I18

    full reading [+] show sequence

    Nucleotide sequence: J013159I18 - full reading
    GAGCTAGCCG AGCACGAGCA GAGCGTCTTG TGCGCGCGCA TCTGCATCTG 
    TATGCGGCGC CGGCGATCTC ATCAATTCTG CGCTGCCGGA TCGAGATCGA
    GCTAGGCCAA TAGGCCATAG CCAAACCATG GCACTCATGC TCGCGGCCGC
    GGCGAGGGAG TGGACGCCGT GCGCGGCGAT GGTGGCGGCG CAGTGCATCT
    ACGCGGCCAT GACGCTCTGG GCCAAGGCCA TGTTCGGCCG TGGCGTCAGC
    CCCGTGATCT TCGTCGTCTA CCGCCAGGCC ATCGGCACCC TCGTCCTCGT
    CCCCATCACC CTCCTCGCCA ACAGGGCAAA AGTGAAGGAG ACGAGGAGCC
    TTGGGACGAC AGGCTTGTTC TTGGTGTTTG TGACGGTTTT GCTCGGGCAC
    GGCGACGGTA AACCAGAACC TGACCTACCA AGGGCTGCAT CTGGGCTCGT
    CATCCATGGC GACGGCCATG ACCAATTTGA TACCCGCGAT AACTTTCTTG
    ATGGCAGCGT CAGCAGGGCA GGAAAGAGTT AACGTCAGAG AACGGGGCAC
    CATGGCCAAG ATATCCGGAA CCATAGTCTG CGTGGGAGGA GCCACGGCCA
    TGGCGTTCTT CAAAGGCCCA AAGCTTCTGA ACTACACGCT TGGTGACCTG
    AACATGCTCC TCCACTCGCC GGCGATCAGC AAGTGGGTTC TCGGCGCGCT
    CTGCCTCGTC GTCAGCAGCT CATGCTGGTC ACTCCGGCTC ATACTGCAGG
    TGCCAATCTG CAAATTTTAT GTGGATCCTC TGTCTCTGTC GGCATGGACC
    TGCTTCTTCT CGACGCTGCA ATGCGCAGCG CTCGCCGTCT TCCTGGTCCC
    GGACGCGAAC GCATGGAAGA TCCACTCGCT CTTCGAGCTC TCGAGCTACG
    CCTTCGCCGT GAGTTCAGAA TTGCCATGCG TTTTGTTGTG TGTGTGCCCG
    GACAGCAGAA TGGACAAGTT CTGGTTTTCT GGATCTGAAC TGAACAGAGC
    TGGACATAAA TAATGCAGGG AGTGTTTGGG TCAGGCGTCT GCTTCTACCT
    GCAATCATGG TGCATCTCGG TGAGGGGGCC CCTCTACTCG GCCATGTTCA
    CCCCTGTCTG CACCGTGGTC ACCACCATCG TCGCCGCCGC CGTTCTCCAG
    GAGGAGCTGC ACATTGGAAG GCACGCTTCT TCTCTTCTCT CGACGACAGA
    CACGC

    Gene models with high sequence identity

    1. AT4G30420.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 2e-47; Score: 38.10

     

    InterPro Scan Digest

    See the detailed result >

    AT4G30420.1

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G28040.5); Has 3568 Blast hits to 3558 proteins in 670 species: Archae - 22; Bacteria - 1633; Metazoa - 4; Fungi - 0; Plants - 1218; Viruses - 0; Other Eukaryotes - 691 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023106G11 - Rice Full-length cDNAs - Original: J023106G11

    full reading [+] show sequence

    Nucleotide sequence: J023106G11 - full reading
    GCTCCCCCCC ATCACCACCA CTCCTCCGCC GCGTCGCCGT CGCCGTCACC 
    GACAAGCCTC GCCTCTCCTC GCCGGTTCGC CGTCGCGGCC GCCTCCTTTG
    TCCGCTCCAG CGCCCTCCTC GGCCCGGATC GGCCCTTCCC CAGATGGAGA
    GGGCACTTGA TTCCTTGACG TACAAAGGCT CCATTCCAGA CGCTATCCTT
    CAGTCAAGAA GGGATAACAA ACTCTTTGTA GTGTACATAT CAGGTGAAGA
    TGAGACTTCG AGTAGTTTGG AACAGTCGAC ACTTGTTAAT GAAAGTGTGG
    CTGAAGTGAT AGGCAACTGT TGCGTATTCC TGCATCTAAA ACAAGGCAAC
    GTCGATGCAT CCCAATTTTC AGCTATATAT CCACAGAAGG CTATCCCAAG
    TATATCTGTC ATTGGACAGA ATGGTGTTAT GCTATGGTGT CATGAGGGAT
    ACATCAGCTC GAAAGATCTG AAAGAAAATA TTGAGAAAGC TTGGGCTACC
    CTTCACCTGC AGGGTACAGC AGCAGCCTTT CTGACTGCAT CACTTGCTTC
    AAGAATGACT GAACCTGTGA ATACCACCCC GACCACTCTA CCTACTCAAG
    GAGGCTCATC TGCTGCAGAG AATCCCTCTA CTTCATCAAA TCAATCTACA
    GGAACTTCTG GAGCCAGTGG GTTTGCTAAT CCTACTGATT CGGTGGCACA
    GCCACCTAGA AGCACAAGCC GTGATGAAAC TCCCAGCATA AGTGAAAAAG
    AATCCTCAAA TTTGGATTCA AGTCCAGGTA ATAGAACTGT TCAAGAAAGG
    CCAGATTCAG ATAGTGCGCA AGTTAAAGGT TCTTTGCCTG ATCATCCAAG
    GAGCTCAAAT ATAGAAGGTT GTGCAAATCC AGTTCAATCA GGCAATACAG
    CATCACTAAA ACAGAAAAAT AAAGTGGATG ATGGTTTCAC CAAAGTTTCC
    TCAGAGTCAG TTCCTACCAG AGTAGCTAGT AGAGGTAAAT CGTCAAAGGT
    AGCTGTGGAT CAAGACAAGG CAACAACCAC TAGCACCCCT ATTGAACCTG
    CCCCTGTGAG GTCAAATGAT ATTCAGCTGG TCGTTCGCAT TCCTGATGGA
    CCTAGTCTGC AGATTAAACT GACAAAAGAT GATAACTTAA GGAAGGTGAA
    GAATTTTGTG GATGAAAACC GTGCTAATGG GGCTGGATCT TACGATCTTG
    CTATGCTTTA TCCAAGAAAA GTTTTCACTG AACAAGACAT GGAAGCCACG
    TTGCATGAAC TGGGTATTGA AACCCGGCAG GCTCTCACTA TTGTTCCACA
    TCATAAAACC ATTCGAGCAG CAAAGCGCCA ATCATCATCA TCACCCCATG
    AAGGGGATAA CAATATGGAT GCAGACAGCT CAGGTGGTTC GGGATATTTC
    GGTTATCTGA GAACTGCCCT ATCGTTTGTG AATCCACTGT CCTACTTGAG
    AGCAAATGCT GCTCCATCAA ACCCTGATCA GTTGGCAAAT CAGGGGTCGC
    CACAGTACAG ACCGAGCACT GGACCCTGGA ATCGTCCTGG AGGGGACACT
    GCTTCGG

    Gene models with high sequence identity

    1. AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
      E-value: 9e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan UBX 16.59
    Gene3D no description 1e-10
    HMMPfam UBX 2.8e-13
    superfamily Ubiquitin-like 5.6e-16
    HMMPanther UBX DOMAIN-CONTAINING 2 3.4e-47
    HMMPanther UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ 3.4e-47

    See the detailed result >

    AT2G43210.2

    Model type
    Protein coding
    Short Description
    Ubiquitin-like superfamily protein
    Computational Description
    Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR