K15104

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15104

Determination of introduced cDNA(s)

J013159I18 - Rice Full-length cDNAs - Original: J013159I18

full reading [+] show sequence

GAGCTAGCCG AGCACGAGCA GAGCGTCTTG TGCGCGCGCA TCTGCATCTG 
TATGCGGCGC CGGCGATCTC ATCAATTCTG CGCTGCCGGA TCGAGATCGA 
GCTAGGCCAA TAGGCCATAG CCAAACCATG GCACTCATGC TCGCGGCCGC 
GGCGAGGGAG TGGACGCCGT GCGCGGCGAT GGTGGCGGCG CAGTGCATCT 
ACGCGGCCAT GACGCTCTGG GCCAAGGCCA TGTTCGGCCG TGGCGTCAGC 
CCCGTGATCT TCGTCGTCTA CCGCCAGGCC ATCGGCACCC TCGTCCTCGT 
CCCCATCACC CTCCTCGCCA ACAGGGCAAA AGTGAAGGAG ACGAGGAGCC 
TTGGGACGAC AGGCTTGTTC TTGGTGTTTG TGACGGTTTT GCTCGGGCAC 
GGCGACGGTA AACCAGAACC TGACCTACCA AGGGCTGCAT CTGGGCTCGT 
CATCCATGGC GACGGCCATG ACCAATTTGA TACCCGCGAT AACTTTCTTG 
ATGGCAGCGT CAGCAGGGCA GGAAAGAGTT AACGTCAGAG AACGGGGCAC 
CATGGCCAAG ATATCCGGAA CCATAGTCTG CGTGGGAGGA GCCACGGCCA 
TGGCGTTCTT CAAAGGCCCA AAGCTTCTGA ACTACACGCT TGGTGACCTG 
AACATGCTCC TCCACTCGCC GGCGATCAGC AAGTGGGTTC TCGGCGCGCT 
CTGCCTCGTC GTCAGCAGCT CATGCTGGTC ACTCCGGCTC ATACTGCAGG 
TGCCAATCTG CAAATTTTAT GTGGATCCTC TGTCTCTGTC GGCATGGACC 
TGCTTCTTCT CGACGCTGCA ATGCGCAGCG CTCGCCGTCT TCCTGGTCCC 
GGACGCGAAC GCATGGAAGA TCCACTCGCT CTTCGAGCTC TCGAGCTACG 
CCTTCGCCGT GAGTTCAGAA TTGCCATGCG TTTTGTTGTG TGTGTGCCCG 
GACAGCAGAA TGGACAAGTT CTGGTTTTCT GGATCTGAAC TGAACAGAGC 
TGGACATAAA TAATGCAGGG AGTGTTTGGG TCAGGCGTCT GCTTCTACCT 
GCAATCATGG TGCATCTCGG TGAGGGGGCC CCTCTACTCG GCCATGTTCA 
CCCCTGTCTG CACCGTGGTC ACCACCATCG TCGCCGCCGC CGTTCTCCAG 
GAGGAGCTGC ACATTGGAAG GCACGCTTCT TCTCTTCTCT CGACGACAGA 
CACGC

Gene models with high sequence identity

AT4G30420.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
E-value: 2e-47; Score: 38.10

InterPro Scan Digest

See the detailed result >

AT4G30420.1

Model type: Protein coding
Short Description: nodulin MtN21 /EamA-like transporter family protein
Computational Description: nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G28040.5); Has 3568 Blast hits to 3558 proteins in 670 species: Archae - 22; Bacteria - 1633; Metazoa - 4; Fungi - 0; Plants - 1218; Viruses - 0; Other Eukaryotes - 691 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023106G11 - Rice Full-length cDNAs - Original: J023106G11

full reading [+] show sequence

GCTCCCCCCC ATCACCACCA CTCCTCCGCC GCGTCGCCGT CGCCGTCACC 
GACAAGCCTC GCCTCTCCTC GCCGGTTCGC CGTCGCGGCC GCCTCCTTTG 
TCCGCTCCAG CGCCCTCCTC GGCCCGGATC GGCCCTTCCC CAGATGGAGA 
GGGCACTTGA TTCCTTGACG TACAAAGGCT CCATTCCAGA CGCTATCCTT 
CAGTCAAGAA GGGATAACAA ACTCTTTGTA GTGTACATAT CAGGTGAAGA 
TGAGACTTCG AGTAGTTTGG AACAGTCGAC ACTTGTTAAT GAAAGTGTGG 
CTGAAGTGAT AGGCAACTGT TGCGTATTCC TGCATCTAAA ACAAGGCAAC 
GTCGATGCAT CCCAATTTTC AGCTATATAT CCACAGAAGG CTATCCCAAG 
TATATCTGTC ATTGGACAGA ATGGTGTTAT GCTATGGTGT CATGAGGGAT 
ACATCAGCTC GAAAGATCTG AAAGAAAATA TTGAGAAAGC TTGGGCTACC 
CTTCACCTGC AGGGTACAGC AGCAGCCTTT CTGACTGCAT CACTTGCTTC 
AAGAATGACT GAACCTGTGA ATACCACCCC GACCACTCTA CCTACTCAAG 
GAGGCTCATC TGCTGCAGAG AATCCCTCTA CTTCATCAAA TCAATCTACA 
GGAACTTCTG GAGCCAGTGG GTTTGCTAAT CCTACTGATT CGGTGGCACA 
GCCACCTAGA AGCACAAGCC GTGATGAAAC TCCCAGCATA AGTGAAAAAG 
AATCCTCAAA TTTGGATTCA AGTCCAGGTA ATAGAACTGT TCAAGAAAGG 
CCAGATTCAG ATAGTGCGCA AGTTAAAGGT TCTTTGCCTG ATCATCCAAG 
GAGCTCAAAT ATAGAAGGTT GTGCAAATCC AGTTCAATCA GGCAATACAG 
CATCACTAAA ACAGAAAAAT AAAGTGGATG ATGGTTTCAC CAAAGTTTCC 
TCAGAGTCAG TTCCTACCAG AGTAGCTAGT AGAGGTAAAT CGTCAAAGGT 
AGCTGTGGAT CAAGACAAGG CAACAACCAC TAGCACCCCT ATTGAACCTG 
CCCCTGTGAG GTCAAATGAT ATTCAGCTGG TCGTTCGCAT TCCTGATGGA 
CCTAGTCTGC AGATTAAACT GACAAAAGAT GATAACTTAA GGAAGGTGAA 
GAATTTTGTG GATGAAAACC GTGCTAATGG GGCTGGATCT TACGATCTTG 
CTATGCTTTA TCCAAGAAAA GTTTTCACTG AACAAGACAT GGAAGCCACG 
TTGCATGAAC TGGGTATTGA AACCCGGCAG GCTCTCACTA TTGTTCCACA 
TCATAAAACC ATTCGAGCAG CAAAGCGCCA ATCATCATCA TCACCCCATG 
AAGGGGATAA CAATATGGAT GCAGACAGCT CAGGTGGTTC GGGATATTTC 
GGTTATCTGA GAACTGCCCT ATCGTTTGTG AATCCACTGT CCTACTTGAG 
AGCAAATGCT GCTCCATCAA ACCCTGATCA GTTGGCAAAT CAGGGGTCGC 
CACAGTACAG ACCGAGCACT GGACCCTGGA ATCGTCCTGG AGGGGACACT 
GCTTCGG

Gene models with high sequence identity

AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
E-value: 9e-60; Score: 228.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	UBX	16.59
Gene3D	no description	1e-10
HMMPfam	UBX	2.8e-13
superfamily	Ubiquitin-like	5.6e-16
HMMPanther	UBX DOMAIN-CONTAINING 2	3.4e-47
HMMPanther	UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ	3.4e-47

See the detailed result >

AT2G43210.2

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
Link: InterPro Scan - TAIR