K15115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15115

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15115

Determination of introduced cDNA(s)

  • J023136M05 - Rice Full-length cDNAs - Original: J023136M05

    full reading [+] show sequence

    Nucleotide sequence: J023136M05 - full reading
    GGGTAGCAAT ACTGTTAACT TCTGCAACAA ATCATGGATT GGAACCACAT 
    TAGCATGGGA AAGCAAGGCC CTAAAATCAA GGCATATGAA CAAGATCTTT
    TCCATGTCCG TTCAACAAGC AAGCAAAAGC AAAGTTGCTG TAAAACCTCT
    GGAATTGGAT AATGCGAAGG AGCCACCCCT TAACTTATAC AAACCAAAGG
    AGCCTTACAC AGCCACAATT GTCTCAGTCG AAAGGCTTGT AGGCCCTAAA
    GCTCCTGGTG AAACATGCCA TATTGTTATT GATCATGGTG GCAATGTTCC
    ATACTGGGAA GGACAAAGTT ATGGTGTCAT TCCTCCAGGA GAGAACCCGA
    AGAAACCTGG TTCCCCAAAT ACTGTCCGGC TCTATTCTAT TGCATCTACT
    AGGTACGGTG ATTCTTTTGA TGGAAAGACT GCCAGTTTGT GTGTTCGTCG
    TGCTGTTTAT TATGATCCTG AAACTGGAAA AGAAGACCCC ACAAAGAAAG
    GTATCTGCAG TAATTTCCTA TGCGACTCTA AACCAGGCGA CAAAGTTCAG
    ATAACAGGTA TCGTGCTCCT TTCAGATGGC ATATAAATAT CATTCTTATA
    TGTTCCAACG ATAAACAATA GCCCCTAACT GAAAATTTAG GCTTTTAACC
    TTTTTTTCTT ATCTGAAGTT CACATCTGTG ATGCAATGTT TTTTTCTGAA
    ATCTTTTGGA TGGGTATGTA TAGAGGGCAT ATTAGCTTAT AAGCTTTCTG
    AAAGATGTGG CTGGAGAAAA TATTAGCTTA TAAGCTTTCT GAAAGATGTG
    GTTGTGGGAG AAAACAATCT GAAGAAGAGA TGTCTTTCAA TATTATTATG
    ACTTGTTTTG TAACTTATGG CTTGCATGTG GTATTCCAGC CTCAAGCTTA
    TCACTGAAGT TACTCTTCAC ATGCAGGCCC CTCAGGCAAA ATCATGCTTC
    TACCTGAGGA TGATCCAAAT GCAACCCATA TCATGATTGC TACTGGCACT
    GGTGTTGCTC CCTACCGTGG CTATCTACGT CGTATGTTCA TGGAGGATGT
    CCCAAGTTTC AAGTTTGGTG GTCTGGCTTG GCTATTTCTA GGTGTTGCTA
    ACACTGATAG CCTTCTGTAT GATGAAGAGT TCACAAACTA CCTTCAGCAG
    TATCCAGACA ATTTCAGGTA TGATAAAGCA CTAAGTAGGG AACAGAAGAA
    TAAGAATGGT GGAAAGATGT ATGTGCAGGA CAAGATTGAA GAGTACAGCG
    ATGAAATTTT TAAACTTTTG GATGGCGGTG CACATATCTA CTTTTGTGGT
    TTGAAGGGTA TGATGCCAGG GATCCAGGAC ACACTCAAGA GAGTAGCTGA
    GCAAAGAGGT GAGAGTTGGG AGCAGAAGCT GTCGCAGCTC AAAAAGAACA
    AACAATGGCA CGTGGAGGTT TACTAAGTTA CTAAAAAGGC ACGGGCTGTG
    ATTTTGTGAT TGTTTTGCAG CGAGTTGAAA CATAAAACAG TAAAAAGCGA
    TGATTCTCGT TGCATTGTAA AATTGTCAAT CTTATTCATA AGCTTCTGCT
    TGACATGGTG AATAAAATGA AGCATATGCT AATTTTGACT TAGTATTGTG
    AAATCATACC AGCTTTTCAT GGGCATCATG CATGATAAAA ATGTGAAGTA
    GTGGGACTTT CCT

    Gene models with high sequence identity

    1. AT4G05390.2 [+] show detail - root FNR 1
      E-value: 2e-86; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FERREDOXIN REDUCTASE 0.00000000096
    HMMPanther FLAVODOXIN-RELATED 0.00000000096
    HMMPanther Ferredoxin Reductase 1.1e-126
    HMMPanther FLAVODOXIN-RELATED 1.1e-126
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 0.00007
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 0.00007
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 0.00007
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 7.5e-17
    ProfileScan Ferredoxin reductase-type FAD-binding domain 11.957
    Coil coiled-coil 0
    Gene3D no description 5.5e-45
    Gene3D no description 7.9e-43
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 1.4e-26
    superfamily Riboflavin synthase-like beta-barrel 2.6e-34
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 3.2e-50

    See the detailed result >

    AT4G05390.2

    Model type
    Protein coding
    Short Description
    root FNR 1
    Curator Summary
    Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
    Computational Description
    root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.1).
    Link
    InterPro Scan - TAIR