K15124

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15124

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15124

Determination of introduced cDNA(s)

  • J023013A09 - Rice Full-length cDNAs - Original: J023013A09

    full reading [+] show sequence

    Nucleotide sequence: J023013A09 - full reading 
    GGGAGTGGGT GTATTTGGTC CGCCTTGTGC TGTCGTCGTC GACCTACCCT 
    ACCCCGTGGA GTGGAGGCGT GTGGATGATT CGTCCTCGTC GCCGTCGTCG 
    TGGCGACGTG GGCAACCGAC GCCGCCTCCC GGCTCCCACG GTCCCACCCG 
    CGGCATGCGG TGGCGTGTCG TGGCCGCACA TCCATATCCA TGTCATCCTC 
    ATCCTCTGCC CCTTGTTCAT CCCCCATCAT CCGCCCATGT CCCTGATTGA 
    TTGAAATTCA TTGGAAAGGG ACATCCTCCT CCATATCCAC CACAACCTGA 
    ACCTGTGGTC CAGATTGGGG AACCTCCCAG CCAAATTCAT TTCTTGGTTT 
    ATTCTCATCT GAGGTCTTCA GTCAAGTCCC TAAGGGCTAT TCTTAATAAG 
    CTACAAGAAG AAGCAAGCAA CAGATCATCA TTCAACGGAT ATTTCAGTTA 
    TATGATGGTT GAGTTGTCAA CGGCAAATTG GCTGCGATTC ATGTTGAAAT 
    AAAATTCTGT GCTGTCCAAT CTTCATATTT ATCTTACCAG TCGTCAGTCA 
    TCAGAGCTTA GGAAAAAAAA AATCAAAGAC AGGGCTTTCA TTTTCCTACG 
    ACTCGCCTTT ACAAAGCAGA CGCTGTCAAC ATGGAAACAT ACACTACGGA 
    TGAAGCGCTT GAATTCATGG GGTTTGGGAA ATTCCAACTA CTTGTGCTTG 
    CATATGCAGG CATGGGTTGG GTCGTAGAGT CCATGGAAAT TATGCTATTG 
    TCATTTGTTG GGCCACTGGT GCGGGAGGAA TGGAACATTT CTGCTGAAAA 
    TGAGAGTCTG CTCTCAAGTG TAGTGTTTGC TGGTATGCTA ATAGGAGCTT 
    CTGGTTGGGG TTTTGTGTCT GACAAATATG GAAGAAGGAT TTGCTTACTA 
    TTTTCAACCC TGTTTGCCAG TGG

    Gene models with high sequence identity

    1. AT3G13050.1 [+] show detail - Major facilitator superfamily protein
      E-value: 5e-30; Score: 128.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major facilitator superfamily, general substrate transporter 1.3e-15
    HMMPanther SUGAR TRANSPORTER 3.5e-28
    HMMPanther SUGAR TRANSPORTER 3.5e-28
    Coil coiled-coil 0
    ProfileScan MFS 14.568
    HMMPfam General substrate transporter 2.8e-05

    See the detailed result >

    AT3G13050.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR