K15132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15132

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15132

Determination of introduced cDNA(s)

  • J013002J17 - Rice Full-length cDNAs - Original: J013002J17

    full reading [+] show sequence

    Nucleotide sequence: J013002J17 - full reading 
    GCTTTTTCTC TTTTTCTCGC TCGCCTCCGT ACGCCACACG GGAGAAGACG 
    GCGGCGGGGA GCCCGCGGCG GCTAGGGTTT TGATTGATTT GTCGCCGGCG 
    ACGCGCCGCC CGCCATGGAG GGAGCTGCTG GAGACGTTCG AGGCCGCCAA 
    GAAGGCGGCC GACGCGGCGG CCGGGGCGGA CGACTCCCCG GAGGCCGACC 
    GCTGCCTCGA CGCGATGCGG CGGCTGCGCG GTCTCCGCGT CACCACCGAC 
    GTCCTCGTCT CCACGCAGGT TGGAAAACGT CTTCGTTACC TTACTAAGCA 
    CCCTCACTCA GACATACAAT CCATGGCTAC AGATCTTCTG GGGTACTGGA 
    AAAAGGTTGT TATCGAAGAA GGAAAGAAAA ATGGTACCAC AGAAAATGTT 
    GGATCAACCA ACTCAGCCGC CAGAGCTGAA AAGGCTCAGC CCATGAAGGT 
    TGATAAGAGT TCTGCATCAG GAAGTGTGAA GCCTGAGAAA AGAGAAGTCA 
    ATGTTAGGGG CCAGAAGCCT GAGAGCATCA AGGTTGAGAA GATCACCAAT 
    AATGATTCCA AAAACCAACA AGTCGAGGTA GAGAGGGCTC CAAAGGAAGC 
    CACTAGAACT CCTGATACAA AGAAGCCATC TTCTGTTCCA AATGGCCCCC 
    CAAAGCTGAC ATCTCTTGTC AAATGCAATG ATCCAACTAG AGATAAAATC 
    CGGGAACTAC TTGCAGATGC CTTCTCCAGG GTTCATGGAG AGACTAGCAA 
    AGATGACAGG GAGGAAGTGA GAAACATCTT AGATGAAGTG GATGCACGAG 
    ATCCATTCAG AGTTGCTGTG ACCGTTGAAT CTGCGTTATT TGAGAGGCTG 
    GGACGTTCAA CTGGGGCTCA CAAGGCAAAA TACAGGTCAA TAATGTTCAA 
    TCTTAGAGCT GACAACAACA CTGATTTCCG AAGAAGGGTT CTCCTTGGCC 
    AAGTGAGGCC TGAGAGGCTT GTTGACATAT CTCCAGAAGA GATGGCTAGT 
    GACGCGAGGA AGCTTGAGAA TAAGCAGATC AAGGAGAAGG CTTTGTTCGA 
    TTGTGAGCGT GGAGGAGCCC CAAAGGCGAC TACTGATCAG TTCAAGTGTG 
    GCAGGTGTGG CCAGCGGAAG ACGACTTACT ACCAGCTGCA GACTCGGAGT 
    GCTGATGAGC CAATGACAAC ATTTGTGACA TGCGTGAACT GCAACAACCA 
    CTGGAAGTTC TGCTGAGCGC CAATCTGCTG AAAATGTTCT CCCGGCTAGC 
    GGTGTCATTT GAATTTGACA GGCAGGTTGG CTTCAATTTT CCATAAACTA 
    GGAGCCTGTT TCCTTTTTAT TTTACCTTTC TTTTCTCTTT CGGAACCTGA 
    TTTATTCAGA TTGTACTAGT TGACCGCAAC TGTTGTTGAC TATATTACCA 
    TTACCTGTTG TACCTGTTT

    Gene models with high sequence identity

    1. AT2G38560.1 [+] show detail - transcript elongation factor IIS
      E-value: 1e-102; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Transcription elongation factor, TFIIS 5.8e-110
    Gene3D no description 4.1e-08
    Gene3D no description 4.5e-21
    HMMPanther TRANSCRIPTION ELONGATION FACTOR S-II 1.9e-55
    PatternScan Zinc finger, TFIIS-type 0
    HMMSmart Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type 4e-17
    HMMSmart Transcription elongation factor S-IIM 1.1e-27
    HMMSmart Zinc finger, TFIIS-type 9.7e-24
    HMMPfam Transcription elongation factor S-II, central domain 1.3e-30
    HMMPfam Zinc finger, TFIIS-type 9.2e-20
    HMMPfam Transcription factor IIS, N-terminal 8.2e-12
    HMMPIR Transcription elongation factor, IIS 1.1e-155
    superfamily Transcription elongation factor S-II, central domain 9.8e-27
    superfamily Zinc beta-ribbon 2.8e-21
    superfamily Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal 3.2e-11
    ProfileScan Zinc finger, TFIIS-type 14.637
    ProfileScan Transcription factor IIS, N-terminal 21.21
    ProfileScan Transcription elongation factor S-II, central domain 32.324

    See the detailed result >

    AT2G38560.1

    Model type
    Protein coding
    Short Description
    transcript elongation factor IIS
    Curator Summary
    Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
    Computational Description
    transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR