K15141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15141

Determination of introduced cDNA(s)

J023022E21 - Rice Full-length cDNAs - Original: J023022E21

full reading [+] show sequence

TTGGGACCAA GGAAAGCCAT GGCAATGGCA TTGCCAGGTT TGTGGTGAGG 
CAGATAATTG GAATTCTCTG CGGCTTCATG AACGAACCAT TATCGGGCTG 
TGTTCTCTGT CAACAATTTG ATGTTATGGC ACCGTACACT CAAGTCACAA 
ATGGGCAGTG GCGTAATCTT GATCCTTTGG GTCATGGGAG CTGATCGAAA 
TGCAGGTGCG AGGAACAATG ATTTCTACCA GGCCCTGAAC ATGGCAAAAG 
AGGAGGTCTG TGTAGGTGCA GAAGAGGAGT TTTGTGTAGG GGCTGCTGAG 
GAGGGAGTAA GTTGCACTTT GAGAATCATT CTGCCCATAA TACCTGAACA 
TCACAGCTCT GCAGGAGCAA TTCTTCAAGC AGGCTTCCTT GCAATCATCT 
CTGTTTTTTG CATTGGCAAT AATTTGGCCT TCATCAAAGT AAGAAACATC 
CGTAAGACTC AAGAATTGAT GGTATTGCAT TTCTTGACAA GATATTGGAG 
TCACTGGTGC ACAACCAAGA TTAGCCTTCC GCTCATCAAC TGGATGGAAG 
TAACTTGAAC TAGAATTAGC CTGAAGAGGA CAGATGCATT GGCCACTTGT 
GCATATCCCG TAATCCCCAC ACACTGTTGG GAAAGCACAA TCATCAGGGA 
ATTTCTGGAT TACATCAGAT ACCATGGTCC AATTTGATCC TGCATCAAAC 
CACTCATACA ACCTCAAGTG TCCATCAGAC TCTAACCTTA TGTATTGGGT 
GGACTTTGCT TCTGGCAGTG CAATAATGGC TTCAGGCTTT CCTGCCTGGG 
TGGTACGTAT AAAGATGCTG AGGCTGCCAT TCATGAAGGT AAACCTTGTC 
GGATATTTTC CTCTCTTGTT TGTTGTCTGC TCATAGTAGA GTTGAGGCGG 
TGTGGATTCA ACGTAACCAT ATAAACCATC TGAAAGAACA GTCATATACA 
ACTTACTCTC AGTCCAATTT GTGTTGGAGG TATTTGCTCT CAGCCTCATG 
CCCTGCAGCA AAGACTGCCC AGGGACCAAT GCATCAGTTG GATGATCAAA 
TGACTGCCAC ACTGTCACAT TCCTCTGATC AAACAGCACC AGGTTTCCTT 
GCTCTGTGAT CTGCATGCCT ACAACAGATC GGCCTGAAGT GCCGCTCGAC 
CAGACGAGTC TGCCATCGGC TTCACGGAGG ACCAGGATCC CATCTCCAGT 
CAGCTCCAGG GTAGCATTCT CTCAACAGGG TGTGCCCGGT TGGCCGACCA 
GACAACCTGC GGAATACCGT TTCGTACCGA GGTGATACTG GCACCACCGT 
CAGTGTAGAC AATGAAGATG GCGAAGAGGA ACGCTTTGCA GGGTGGAGCG 
CAGAAGAACC CCGCGGCGAA GGAGGGGCCA AATATGGTTT CTGGTGAGCG 
GAGGATGATG GAGCGCACGG CTGACCCGTC GGTGAAGTCG ACGCTGTGTT 
GGAGCACCGC GGCGTTGTTG ACCCACCGCG TCGAGAGGTT TGCCGTCGGA 
TAGTCGTAGA GCTGCTGCAC GGAGATGGCC GGTGCTGCAG TTGCAAGCAT 
CAGCACCACC ACCACCGCCG CAGCAACGAT GTCGAAGGAC AAGAGATTTG 
CAGGACACAT GGTTCTTGGA TGGGAAAAGC GATGAGAAGC CTGCAAGGAA 
CTGTGGCCAA TTTCAGAGGT TGGCAAGATG TCCTGACCTG GTGATATGTC 
AATACATGTT GAAAGTTCAG GGATATATAC CACACGGTGC TTTGAATTTG 
GTTTTGGAAG CTTGAATTGG TTTCTCCAAT CACCAGTTCT AATTCTAAAG 
GTTCAAGAAT TGGCTGTGCC GCATTACATT GTCGAGTGGC TTGACCAGTG 
AGGCAGTGAC TACCACCATG GACTCAGCGT AATTTCCGTG TGCTATCTCA 
TTGTTTTCTT GTCAAGAAAA AGGGCAAGTG CTGATGCATC ACCGTTAACA 
ATTTCATCAT TTAAGCATTG TCGGAGTAGA TAATGGTATG GTTTTAAGCA 
ATTTCGTAAT TGAGCGCC

Gene models with high sequence identity

AT1G78830.1 [+] show detail - Curculin-like (mannose-binding) lectin family protein
E-value: 2e-28; Score: 124.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Curculin-like (mannose-binding) lectin	11.379
HMMPfam	Curculin-like (mannose-binding) lectin	1.9e-20
HMMPfam	PAN-2 domain	8.9e-06
HMMPfam	S-locus glycoprotein	2.4e-05
superfamily	Curculin-like (mannose-binding) lectin	3.1e-23

See the detailed result >

AT1G78830.1

Model type: Protein coding
Short Description: Curculin-like (mannose-binding) lectin family protein
Computational Description: Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR