K15207

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15207

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15207

Determination of introduced cDNA(s)

  • J013116J08 - Rice Full-length cDNAs - Original: J013116J08

    full reading [+] show sequence

    Nucleotide sequence: J013116J08 - full reading 
    GGCCGAGCAG CGCCGCGGAG GCGTCGTCGT CTCCGGTGGG TTGCAGGAGG 
    CGAATGCGAT GGGGTCCAAG ACGAAGGGGT GCTGCGGGTG GCTGATCGTG 
    GCGCTGGTGG CGTCGCTGGT GGCGACGGCG GCGGTGGTGG CCATCATGAA 
    GAAGAAGGTC GGCGGGGGGA GCGGGCGCAA GCTCAAGCCG CTGCCGGTGC 
    CCGGCCCGCC CGGGGCCATC GACTCCAAGT ACGGCGACGC GCTCGGGGTG 
    GCGCTCCAGT TCTTCCAGGT CCAGAAGGCG GGGAAGCTGG AGAACAACCA 
    GATCCCGTGG AGGGGGGACT CGGCGCTGGA TGATGGGAAA CCAGCGGGGC 
    TGGATCTTTC CAAGGGAATG TATGATGCTG GTGATCATAT CAAGTTTAGT 
    TTCCCGATGG CCTTCACGGC AACGGTGCTC TCGTGGTCCA TACTTGAGTA 
    TGGAGATCAG ATGAGCGCCA CGAAGCAGCT GGACCCTGCG CTTGATGCTC 
    TCCGATGGAT CACTGATTTC CTCGTCAATG CGCATCCATC TGACAATGTG 
    TTCTACATTC AGGTTGGTGA TCCTGATCTA GATCACAACT GCTGGGAAAG 
    GCCGGAGACT ATGTCTGAGA AAAGACCACT CACACAGATT AACACAAAGT 
    CTCCTGGATC AGATGTTGCT GCTGAGGCAG CAGCAGCTAT GGCATCAGCA 
    TCAATTGTTT TCAAATCCAG AGACACTACA TATTCTGATT CACTTCTTCA 
    ACATGCTCAG AAGTTGTTTA CTTTTGCTGA TACTTATAAA GGCCTCGCCA 
    GTGACACCTA TCCAAAGCTC CAAAACTACT ATAATTCTAC TGGTTATCAA 
    GACGAACTCC TGTGGGCAGC GAGTTGGCTC TATCATGCTA CAGGAGACCA 
    AACATACCTC AGTTATGTGA CTGTAGAGAA TGGAAAAGCT TTTGCTGATT 
    GGGGAAGGCC AACATGGTTC AGTTGGGATG ACAAACTTGC AGGGACACAG 
    GTGCTCTTGT CAAGATTAAA TTTCTTTGGA TCCAAACAGA CATCTAATGC 
    TGAAAACATG GGACTCAAAA TGTACAGAGA CACTGCTGAA GCCGTCATTT 
    GTGGGCTCCT ACCAGATTCT CCATCAGCTA CTGCCAGTAG GACTGGGGGG 
    GATTGGTGTG GATAAGTGGA TGGAATTCTC TCCAGCATGC CACAAATGCA 
    GCATTCCTTG CTGTTGTTTA CAGTGACTAC ATGCTCACAT CGCAAACAGC 
    AGCAGTGCAA TGCAGTGGAA AGTACTACAG TCCTACAGAT ATACGCAATT 
    TTGCTATATC ACAGGCTAAT TACATCTTGG GAGACAACCC AATGAAGCTT 
    AGCTACCTGG TTGGATATGG GAGCAGCTAC CCACAGCAGG TACACCACAG 
    AGGGGCGTCG ATCCCCGCTG ATGCAAAGAC AGGCTGCAAA GGATTCCAGT 
    ATCTTCATTC TACGAGCCCA AACCCAAACG TCGCCATGGG AGCCCTCGTG 
    GGCGGGCCGT TCCAGAATGA CACTTTCGTC GACTCTCGGG ACAATGCTGT 
    TCAGACAGAG TCAAGCACTT ACAACAGCGG CACCCTCGTT GGTCTTCTTT 
    CTGGTCTGGT CACAACTTCC TCTGTGGCGC AGTCGTTCAC CTAGAGCTCT 
    CTCAGAGTTT GGGCAATGGC TTTGACCAAC CGGGAGGATA TACATGTAGC 
    CATGTACAAT GAGAGATTTT TGGCGTGACC AAAGGCAATG TGCCATCAGC 
    GAAACGCCTT CACGGTGTTC TTCGTTGTTC ATCTTTTGGG TGATGGGTGG 
    TTAGCAGTAG TAGTTCTTGT GCCATAGTGC TATTGTTTAT ACAAATACTG 
    CTGCGTAGTT GCATCCGGTT TGCTGGTGTA CTATCTGATA CTACGAGTGT 
    TGTATTTGTA GGACGGATTC CATTTGTTGA TTCTAAAATG ATCTCTGGTA 
    GCTTGTATTG ATGATCTGTA AAATCCCTCC CAAGATGAAC ATTGCACTGA 
    ACATGTGAGA TCACATGGGG AGAGGGAAGT ATTAATCCAG TTTGTTCAGT 
    ATGTTCATAC ATAAATTGGA CATCTTTTCA GTATGGTTC

    Gene models with high sequence identity

    1. AT1G75680.1 [+] show detail - glycosyl hydrolase 9B7
      E-value: 7e-173; Score: 193.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glycoside hydrolase, family 9 1.4e-122
    HMMPanther ENDO-1,4-BETA-GLUCANASE 1.4e-122
    HMMPanther Glycoside hydrolase, family 9 8.9e-64
    HMMPanther ENDO-1,4-BETA-GLUCANASE 8.9e-64
    superfamily Six-hairpin glycosidase-like 9.4e-43
    superfamily Six-hairpin glycosidase-like 1.8e-102
    HMMPfam Glycoside hydrolase, family 9 6.1e-39
    HMMPfam Glycoside hydrolase, family 9 1.4e-98
    Gene3D Six-hairpin glycosidase 1.5e-36
    Gene3D Six-hairpin glycosidase 3.1e-98

    See the detailed result >

    AT1G75680.1

    Model type
    Protein coding
    Short Description
    glycosyl hydrolase 9B7
    Computational Description
    glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR