K15212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15212

Determination of introduced cDNA(s)

  • J033029A20 - Rice Full-length cDNAs - Original: J033029A20

    full reading [+] show sequence

    Nucleotide sequence: J033029A20 - full reading 
    GGCTTTTCCT TCTCCACCAT TTCTCCTTGT CTCCCACCAC CACTTCCCCC 
    CTTCTCCGAT CCCTCCTCCC ATGGACGCCG CCAAGGATAC CACCGCCGCC 
    GCCGCCGACC AAAACCCTAC CCCCAACCCT CCCACCGCCG CAGCTCCACC 
    CGATGACTCC GCGGCGGCGG CGGCGGCGGG GAGACGGCCC TTCACCAGCC 
    TCACCCAGGA GGAGGCCGAC CTCGCCCTCG CCCGCGTCCT CCAGGAGCAG 
    GAGCGGGCGT ACATGATGCT CAGCGCGCAC CACGGCGGCG ACTACGCGGC 
    CTCCGATGGT GGGAGCTACG AGTTTGACGA GGAAGGGGAG GGGAGCGATT 
    TTGAGGACGA GGATGGGGAC GGGGACGGCG ACGGGGAGGC GCTGGATGAG 
    GACGAGGAGG TGGCCGACGC AGACGCAGAC GCCGCCGGTG ACCCGGCTGA 
    GTTGGACCCC GCGCGGTACG AGGACGACGA GGCCTTCGCG CGGGCGCTGC 
    AGGACGCCGA GGAGCGCGAG GTCGCCGGCC GCCTCATGGC GCTCGCGGGC 
    CTCAGTGATT GGCGAGTGAT GGACCATGAT GATGACGATG TTGATGATGA 
    TGATGATGAG GATGATGATG ATGATGATGA TGATGAAGAT GAAGACGGGG 
    ATGATCCACA GGATGCATGG GAAGATGTTG ATCCAGATGA ATATTCTTAT 
    GAGGAGCTGG TTGCATTGGG TGAAGTAGTT GGTACGGAAA GCAGAGGCCT 
    CTCTGCTGAT ACACTTGCTT CATTACCTTC AATAACTTAT CGAGCACAAG 
    ATAAGCAAGA CGGCAACATG GAACAATGTG TTATTTGCCG TGTGGAATTT 
    GAGGAAGGTG AATCATTGGT TGCACTTCCT TGCAAGCATT CATACCATTC 
    TGAATGCATA AACCAATGGC TGCAATTAAA TAAGGTATGC CCTATGTGCA 
    GTGCTGAAGT TCCTACTTCA CAGGACACCC GGGCATGACA TCACTACATA 
    TTGTAGCCAT TATGGGCGTA TAATTTAAAA GAAGTAGCGG CAGCTTGATA 
    CTTTCTGTCA TCGGTGAAAT GGAAGCATCA GGAGCTGGTG GATTGTTCAG 
    GTCTCTGTAC TTGTGTGCTT CCTTTGCCAT GCCGCTACAT TGGGTCGTGG 
    TTAAGACGCT CATTGTCGCC CATGTATGAT TTGATTAGAT GTGAAATAGT 
    TATTACATGG TTGCATCATT CAAATTCAAA GCAATTAATT TATAGTCTCC 
    TGGTGGCCTG AGGCCTGTTG TAGCCTATAA GTTCCGAAAA AATTTTGAAA 
    ATATACTCTT TCTTTTTCAT ATTTTACATT TATATACACG TCTGAGATTA 
    ATTTGC

    Gene models with high sequence identity

    1. AT3G19910.1 [+] show detail - RING/U-box superfamily protein
      E-value: 4e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 12.135
    HMMPanther RING FINGER PROTEIN 38 1.9e-16
    HMMPanther RING FINGER PROTEIN 6/12/38 1.9e-16
    HMMSmart Zinc finger, RING-type 1.3e-06
    superfamily RING/U-box 3.7e-17
    HMMPfam Zinc finger, C3HC4 RING-type 1.2e-08
    Gene3D no description 3.7e-13

    See the detailed result >

    AT3G19910.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G63530.2); Has 15086 Blast hits to 12507 proteins in 429 species: Archae - 8; Bacteria - 555; Metazoa - 4333; Fungi - 1497; Plants - 5032; Viruses - 175; Other Eukaryotes - 3486 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR