K15214

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15214

Determination of introduced cDNA(s)

J033134B11 - Rice Full-length cDNAs - Original: J033134B11

full reading [+] show sequence

GGTTTTGTGT AGTGTAGATG TGTGAAAGTT AAAACCAGCC GGGTCACTTC 
GCTTCCTGTG GCAGCACAGC TAGCGCGTGG CCATGGACGA CCACCAGAGC 
AAGGTGCAGC GGCTGTACGA CGCGTGCGAC GCCGTCTTCT CGTCGGGGAG 
TAAAGCAGGG TTGCCGACGC TCAAGCAGAT CAGGTGGCTG CAAGACCTGC 
TCGATGGCAT GGAGGCGGCG GACGTCGGGA TCGAAGGCGG CGGCAGCGGC 
GGCGAGAGGT CGTCGTCCTC GGAGGACGAC GACGAGAGGA GCCCGCCGGG 
GCGGCGGTTT CTCTCGGCGC GGGCGTTCAC CCGGATCACC TACGTGCACA 
TCCACGAGTG CGACGATTTC TCGATCGGCG TGTTCTGCTT CCCGGCCGGC 
GCGACGCTGC CGCTGCACGA CCACCCGCAA ATGGTGGTGC TGAGCAAGCT 
TCTCTACGGC TCGATGCGGG TCAAGTCGTA CGACTGGGCG AACGCGCCCC 
CGTGCTCGGG CCCAAGGAAG AGTAAGCATT TGTCTCAGCT GCATGCGAAT 
GCATGCGCCT GTTTGCCGTC GATTCGCTCG CTGATGATCA ATCGACAAAA 
AAACTCGATC GTTTTCTGAT GTCAAGTTGT CAACTGCATC TAACATTTGT 
TCCTTGTCTC ACCTACATAT ACTAGTTTGA GGTTACCTGG CTATGATCAA 
GGACAGAAAA AGGTCTCTGA TAATTTACAA GCAGGATGAG ATTAATACCT 
CCCTACAAAA TCCTTGTAAA AGACGGTTTC AGATAGCCAA ATCCCACCGA 
TGTCTCACCA AACCAGCATT TTTTTTCAGC AATATAAACA GGAGAACCTA 
TCTCTCCCTG TCCACTGCTC TACTCTTGAT ACAGTTTTTA ATGGTTTGGA 
ATTTGCAAAA GATAGCTCTC GCCTGAAACT GGAATAACTT TTTGGATACT 
TGCAGCCTCT GTCGATTAAT TTTTGAATTA CTACTAGCTT ACTTCGGTTG 
GAAGCCCAAG CCACGTGCTG TTGGAAAAAC AACAGTGTAC ATAGAATGAA 
ACAACTGCAC TACTAGTAGT ATCAGAAATT GCCGTTTTTA TACTAAGAAA 
AAAAAAAGAA AAGTAAGTGA CGCCATCCCA CTGCTTTCCA ATATGGCAAG 
ATATCCAAAA GTCCACCAAT CCTCTCAAGA AGAGACAGTA ACGAAATTCT 
CACAGGAATA TAGTATTTTT CATGCAGGTG GTTTAGCCCG AGTGGTCGCC 
GTCGACGAGA TGCGGGAGGC GCCGTGCAAG GCGTCGGTCC TGTTCCCGCG 
GAGCGGCGGC AACATCCACT CCCTCACCGC CGTCACGCCG TGCGCGCTCC 
TCGACGTGCT AGCGCCGCCC TACGCCGAGG ACCTCGGCCG GCCGTCCACC 
TACTTCTCCG ACATTCCCAT CCCCTCTCTC CCTGGTACGC ACACAACATG 
CATGCATAGG AATCGCTAAC CTTCATTCGA TATAAAATAC CTTCAAATAT 
TACATATTTT GGATCATTGG GTGTGCTTCA CGTTTCATGC TCCTGTCTTT 
TTTTTTAAGC CCCGATGATC TCCTCATCTT TTCCAACACT GGCAACATTC 
CAAACTTTGA TAGAGAACTT ACGGATTAGA GTCCTAGGTT AGAGAAGTTC 
GTTAGTTTTA GAGGATAACC TAGGAGGCAA CAGTTCGGGT GGGCAGCAAG 
GCGACCGCGG TATTGCCAAA ACTACAGGGT CGGAAGTGGA TAGTGGGCCG 
GTGGGCTGGT GGGGAAATGT AGAACAAAGT TAGGAGGTGG TGGCGGATCC 
AGTTATGGGG AGCCACGGGA AGATGGCGGC ACAGGGGTAG CCGGCTTGAG 
GACAAGGTGA GGAGAGGAAG CGGGGAAGAG GCTAGCTTAG GGATCTTACC 
GATGTTGTTG ACCACTTCTA GTCAGTTGAC AAGCTTGGGT GGCAGCGGCG 
ATGGTGGTGG TAGTGGCGAT AAGGGGAAGT CGGAAGAAAG AGAGAGTAAG 
GGAGGGGTTT GAAGGTTTGG TTGTCTTGTA CTCCCTCTGT CCCATAGAAA 
ACCTAATAGG CTAGTACATA TATCTAGATT CATTGTATTA GAATATGTCA 
AATCTAGTTT TAGATTTTTT TTTTGACGAA GGGAGTAGTA CACAACATAA 
AGTAATCGGG CGGTCTAAAA TATTAAAGGA TTTTTTGTCA AATGATGATA 
GAAGGTCCCT AATTTGCATA GCAGCACAGG TGACCGTGGA ATGATGATCT 
GTTGAGATTT CTGACAGTGT GATGGCTTTC TCTCAGGTTT TGCAGTACTG 
GAAGAGGCAG ACTTGCCTGA CGGTTTCCGT GTTGCAGGGG CCCCATATGT 
AGGCCCCGAG CTCACAATAG ACATGGACAG CATGTATAAT TAGATAGCTG 
ATCTCTGCTT TTCCAGAGTA TCAGATCAGA TAGCTCTCAC TGCTTTTCTT 
AAAGTAGCAT TTGCATGGAC AATACATTGC ACCTCGCCAT CTTGTATATA 
CGATTATGCA TGTGTGTTGT CGGTTTGTCT TTCTACCATG CTTATCTACC 
AGTTGGTGTT GG

Gene models with high sequence identity

AT5G15120.1 [+] show detail - Protein of unknown function (DUF1637)
E-value: 8e-24; Score: 109.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1637	3.1e-31
HMMPfam	Protein of unknown function DUF1637	6.8e-21
HMMPanther	Protein of unknown function DUF1637	2.4e-12
HMMPanther	Protein of unknown function DUF1637	9.1e-29

See the detailed result >

AT5G15120.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1637)
Computational Description: Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 363 Blast hits to 363 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Link: InterPro Scan - TAIR