K15216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15216

Determination of introduced cDNA(s)

  • J023002G03 - Rice Full-length cDNAs - Original: J023002G03

    full reading [+] show sequence

    Nucleotide sequence: J023002G03 - full reading 
    GGTGTTACGG GAGCATGGAG CTCACTGAGA GTAAGTGCGA TGGCGGGCAA 
    GAAGTTAGCT TGCTGGACGC TCAGCTCGAG CTCTACTGGA ACACCTTCGC 
    CGTCATCAAG TCCATGGCTC TCAAGTCGGC GCTAGACCTC CGCATCGCCG 
    ACGCAGTCCA CCTCCACGGC GGCGCCGCCA CCTTGGCCGA GATAGCCAGC 
    GAGGTGGCCC TCCACCCGTC CAAGATCCCC TGCCTCCGCC GCCTCATGCG 
    CGCGCTCACC GTCTCCGGCG TCTTCGCCGC CGCCGTCAAG CCCGGAGACG 
    GTGGTGGTGG TGAGCCCGTG TACGAGCTCA CGCCGTCGTC GCGGCTCCTC 
    GTCGGCTCCT CGAACCTGTC CGGCATCATG TCCATGATCC TCCACCCGAC 
    GCTCGTCGTC CCCTTCCTCG GCGTCGGCGA GTGGCTCCGC CGCGACCGCG 
    AGCCGCCGGA GGAGGACCCG TACTGCATCT TCAAGCAGGC GCACGGCCGG 
    AGCCTGTGGG AGCTGGCCGG CCGCGACGCG GCGTTCGACG CGCTCATCAA 
    CGACGGGATG GTCTCGGACA GCCGCGTCAT CATGGACTAC GTCGTGAGGG 
    AGCACGGCGA GGTGTTCCGG GGGATCGCCT CCCTGGTCGA CCTCGCCGGC 
    GGGCTCGGCG CGGCGGCGCA GGTCATCTCG AAGGCGTTCC CGGAGGTGAG 
    GTGCAGCGTG ATGGACCTCG GGCACGTCGT CGCCAAGGCT CCCGCCGGCA 
    CCGACGTCGA GTACATCGCC GGCGACATGT TTGAGAGTGT GCCACCGGCA 
    GACGCTGTCT TCCTCAAGTG GGTTCTACAT GACTGGGGCG ATGACGATTG 
    CATCAAGATA TTAAAGAACT GCAAGAAAGC TATCCCTCCT AGAGACAAAG 
    GAGGAAAGGT GATAATCATG GATATAGTGG TCGGAGCAGG ACCGTCTGAC 
    CAGAAGCACA GGGAGGTACA AGCGTTGTTC GATATGTACA TCATGTTCGT 
    CAATGGCATT GAAAGAGATG AGCAAGAGTG GAAGAAGGTT TTTATGGGGG 
    CTGGATTTAG TGGGTACAAG ATTATGCCAG TCCTGGGTTT TAGGTCAATG 
    ATCGAGGTGT ACCCTTGAAG GTGACACCGG TGATTGTGAT TGTGAAATCA 
    ATGATTGGTG ATTAGTTGCT CGGTGGAGAT GTGGAGTGTA GCATGTTTGT 
    TTGTTGTTGT GAGATTCACA ATAGTGATGA TTGTGTGGGT GTGTTTTCTT 
    GGTTGTATGT GAAATTGTGA TTAGAATTCA GACCAATAAT AAATTGTGAT 
    ACTATGTTGT ATCGATGTAA ACTATAGGAA AACGACACGG GTGGACTATA 
    TTTATCC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-75
    superfamily "Winged helix" DNA-binding domain 5.4e-27
    HMMPIR O-methyltransferase, COMT, eukaryota 3.3e-163
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4.8e-27
    Gene3D no description 6.6e-69
    HMMPanther O-METHYLTRANSFERASE 4e-50
    HMMPfam O-methyltransferase, family 2 2.8e-71
    HMMPfam Plant methyltransferase dimerisation 8.6e-13

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR