K15227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15227

Determination of introduced cDNA(s)

  • J033138E11 - Rice Full-length cDNAs - Original: J033138E11

    full reading [+] show sequence

    Nucleotide sequence: J033138E11 - full reading 
    GTTTCCCTCC CCTCTCCCCT CTCCGCCCTA GAGCTCGACG GCGGCGGCAA 
    CAAGGGCTGG GGGATGAAGA TATCCGTGAA GACACTCAAG GGATCCACCT 
    TCCAGATCGA GGTGGACTCC GCGCAGAAGG TTGCTGATGT GAAAAGGATA 
    ATCGAGACTA CTCAAGGACA GCACATTTAC CCAGCTGAGC AACAGATGCT 
    CATTCATCAG GGGAAGGTGC TCAAGGATGA CACCACATTG GATGAAAACA 
    AAGTTCTTGA AAACAGCTTC CTTGTTATAA TGCTTAGACA GGGTAAGGGC 
    TCATCAAGTT CAGCTCCTGC TACATCTAAG GCACCCTCAA ATCAGGCTCC 
    CCCTACTCAA ACAGTGCCTG CAGCTCCTGC ATCTCAAGCA CCAGTTGCAC 
    CAGCAACTAC TGTACCTGTC ACTGTCAGTG CTCCTACCCC AACTGCCACA 
    GCTTCCCCAG CTCCTGCTGT TGCTGTATCC TCTGAAGCTG ATAACTACGG 
    TCAGGCCACC TCAAACCTTG TTGCTGGCAG CAATCTAGAG GCAACAATTC 
    AATCAATTCT TGAAATGGGT GGTGGAATAT GGGATAGAGA CATTGTGCTG 
    CATGCTCTAA GCGCTGCATT CAACAACCCG GAGAGGGCTG TTGAATATCT 
    GTACTCTGGT GTTCCTGAGC AGATGGACAT TCCAGTTCCA CCTCCGAGTA 
    TACAGCCAGC CAATCCTACC CAGGCTTCAC AGGCAACTCA ACCAGCAGCT 
    CCATCAATTC TTTCGTCTGG ACCAAACGCT AGTCCCTTGG ACCTCTTTCC 
    TCAAGCCCTT CCAAATGCTT CCACCGATGC TGCTGGTCTA GGAAATCTTG 
    ATGCTTTGCG CAATAATGCA CAATTCCGAA CCTTGCTTTC TTTAGTGCAA 
    GCCAATCCTC AAATTTTACA GCCATTGCTT CAAGAATTGG GGAAACAAAA 
    TCCCCAGATT TTGCAGCTGA TTCAGGAAAA CCAAGCTGAG TTCCTCCACT 
    TAATCAATGA ACCAGCTGAG GGTGATGATG AAGAGAATTT GCTAGACCAG 
    TTTCCAGAGG CAATGCCACA GACCATAGCA GTTACTCCAG AGGGTCTACG 
    GCGACCCGCT CCAGCACCCC CAGGTCGAGA CCTACTGGGG CAACGTCAAC 
    CCCATCGGGG TGAGAAGCTG CTACGACGAG GGGAAGAGGA CGGCGGAGAC 
    ACTGACCATG GACTACCACC GTGGCGCCAA CCTCGAGGTG AGGATTGCTC 
    GGATCTTCAA CACCTACGGC CCCCGTATGT GCATCGACGA TGGCCGGGTC 
    GTCAGCAACT TTGTCGCCCA GGCACTGAGG AAGGAGCCCT TGACGGTGTA 
    CGGCGACGGT AAGCAGACGA GGAGCTTCCA GTACGTCTCC GATCTGGTGG 
    AGGGGTTGAT GAAGCTGATG GAAGGGGAGC ACGTAGGGCC ATTCAACCTG 
    GGAAACCCAG GGGAGTTCAC AATGCTGGAG CTTGCCAAGG TGGTGCAGGA 
    CACCATCGAC CCAAACGCGC GGATCGAGTT CAGGCCGAAC ACCGCCGACG 
    ACCCGCACAA GCGGAAGCCG GACATCAGCC GCGCCAAGGA GCTCCTCGGC 
    TGGGAGCCCA AGATCCCCCT CCACAAGGGC CTCCCGCTCA TGGTCCAGGA 
    CTTCCGCGAC CGCATCTTCG GCGACCACAA GCCCCACTCC GTCGCCGGCG 
    ACAACTGAAT CTGAATCTGA ACTCGATCGA TCTTATCTCA CCGGCATTTT 
    CTGTAGAAGT TGATCAAGAT ATACACAGTA CTACCAGCAT AGAAGAAGCA 
    GGAGCAGCAG CTAGCAGTAC TGGTGAGTGG TGACTGATAG ATCCATGAAT 
    GGCTGCATTG CAAGAATGGG GATGGGATCG CGTCAGAATC GAACCAATAC 
    GCAAGCTCAT GTTTGTAGGA GTTGAATATT TTATCTATGC TGCGGAATTA 
    AGCAAGCATG ATACAAGATA TATGTAGGTC GTCGCTGGAG TGGTAGCTGG 
    GATGCAGCAC GAGATCGCCC TGTTATTTCT T

    Gene models with high sequence identity

    1. AT2G47650.1 [+] show detail - UDP-xylose synthase 4
      E-value: 6e-107; Score: 385.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam XPC-binding domain 1.3e-21
    HMMPfam Ubiquitin 1.1e-16
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 0.000000000011
    HMMPfam NAD-dependent epimerase/dehydratase 1.5e-19
    superfamily Ubiquitin-like 1.2e-24
    superfamily XPC-binding domain 2.6e-19
    superfamily UBA-like 0.0000000025
    superfamily NAD(P)-binding domain 4.8e-49
    HMMPanther UV EXCISION REPAIR PROTEIN RAD23 1.6e-120
    HMMPanther DTDP-GLUCOSE 4-6-DEHYDRATASE 6.1e-106
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 6.1e-106
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 11.728
    ProfileScan Ubiquitin supergroup 19.499
    HMMSmart Ubiquitin 5e-19
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 0.0000019
    HMMSmart Heat shock chaperonin-binding 0.0000011
    Gene3D no description 1e-21
    Gene3D no description 0.0000000000001
    Gene3D XPC-binding domain 3.9e-20
    Gene3D NAD(P)-binding domain 1.6e-19
    HMMTigr UV excision repair protein Rad23 1.6e-78

    See the detailed result >

    AT2G47650.1

    Model type
    Protein coding
    Short Description
    UDP-xylose synthase 4
    Curator Summary
    encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
    Computational Description
    UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR