K15241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15241

Determination of introduced cDNA(s)

  • J023024L22 - Rice Full-length cDNAs - Original: J023024L22

    full reading [+] show sequence

    Nucleotide sequence: J023024L22 - full reading
    GGCGGGCAAT TCGTCGAGCA CCTGGTGCGC GCGCTCCGCC GCCATGGCGT 
    CCGCCGCGCG GGCTCTGGGC GCGCTCGTCC ACAAGGCCTC GTCGCTGTCC
    TCCTCCGCCG CCGCTCTCAG GAGCGCCGCC GTCCTCCATG GGAGAGGCTC
    TGCTGGCGGC AGCGCCAGAT TGTTCCAGAG GCACGCGGCG AGGCGGAGGA
    TTTCGACGTT CCAGCCGCTT TGCATGGGAC GGCGCTCCTG CAAGATCGCC
    GGAAGGAAGG ATGCTCAGAA TTTGAAAAAG ATGAAGCGCA ACAGTAAAAT
    TGGGAAAGAA ATCGTTGCTG CCATTAAGAA AGGTGGCCCA AGTCCTTCAT
    CAAACACAAC TTTAGCAGCA ATATTGGAGA AAGCAAGGGA ACTTGATATC
    CCCAAAGAAA TCTTGGAGCG CAACATAAAA AGGGCTTCAG AAAAGGGCCA
    AGATACTTAC ACAGAAAAGG TTTACGAGGT GTATGGTTTT GGTGGAGTAG
    GTATGGTTGT TGAGGTCCTT ACAGATAAAA TTACAAGATC TATTGCGGAT
    ATAAGAAATG TTGTAAAGGA CTGTGGAGCA AAATTGGCTG ATCCTGGATC
    TGTTACATTC AGATTCAGAC AAGCTCGAGT GGTGAACATC AAAGTAACTG
    ATGCTGATAA GGACCAACTG CTCACTGTTG CTTTGGATGC TGGCGCCGAT
    GATGTCATTG AACCAAATTT TGATGATGAT GATGATGACG ACGACGACTA
    CGATGACGAC TCCTCTGAAG ATGTTTCAGA AAGGTTTTAC AAGATAGTTA
    CTACATCAGA GAACTATCCT GTTGTGCTAT CGAAGCTACA AGAGGAAGGA
    CTAAAATTTG AAACTGATAA TGGCTATGAA TTGCTGCCTC TGAACCCGAT
    TGAGGTAGAT GACGAGGCCA TGGAACTAAA CAAGGTCCTA GTGTCTAAGT
    TGCTTGAGCT TGATGACGTT GATGCTGTCT ATACTGACCA AAGGTGACTC
    TGAATTCATG ATCCAAGACA CTCGATGCCG ACGGTTCTTG GGTTACACTG
    TGGATTGGCA GTGGATTGGC AGAAAGCTGG TGGATGGAGC TGCCAATGGA
    GCCTGTTTAC TTGCAGCCAG TTATATTTTG CCAAAATTGA GTTGATAATA
    CGGCATTTTT TGTGTAACTA CTTTGCACAC TCGCATCTCA AACAAAGAGT
    TCTAAAAATT TTCCCTTCC

    Gene models with high sequence identity

    1. AT2G25830.1 [+] show detail - YebC-related
      E-value: 8e-98; Score: 354.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF28 1.2e-72
    Gene3D Integrase, N-terminal zinc-binding domain-like 0.000000000000079
    Gene3D no description 8.3e-19
    HAMAP Protein of unknown function DUF28 21.325
    superfamily Protein of unknown function DUF28 4.7e-58
    HMMPanther Protein of unknown function DUF28 1.3e-42

    See the detailed result >

    AT2G25830.1

    Model type
    Protein coding
    Short Description
    YebC-related
    Computational Description
    YebC-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF28 (InterPro:IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro:IPR017856); Has 8692 Blast hits to 8692 proteins in 2830 species: Archae - 0; Bacteria - 6166; Metazoa - 76; Fungi - 120; Plants - 47; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR