K15241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15241

Determination of introduced cDNA(s)

  • J023024L22 - Rice Full-length cDNAs - Original: J023024L22

    full reading [+] show sequence

    Nucleotide sequence: J023024L22 - full reading 
    GGCGGGCAAT TCGTCGAGCA CCTGGTGCGC GCGCTCCGCC GCCATGGCGT 
    CCGCCGCGCG GGCTCTGGGC GCGCTCGTCC ACAAGGCCTC GTCGCTGTCC 
    TCCTCCGCCG CCGCTCTCAG GAGCGCCGCC GTCCTCCATG GGAGAGGCTC 
    TGCTGGCGGC AGCGCCAGAT TGTTCCAGAG GCACGCGGCG AGGCGGAGGA 
    TTTCGACGTT CCAGCCGCTT TGCATGGGAC GGCGCTCCTG CAAGATCGCC 
    GGAAGGAAGG ATGCTCAGAA TTTGAAAAAG ATGAAGCGCA ACAGTAAAAT 
    TGGGAAAGAA ATCGTTGCTG CCATTAAGAA AGGTGGCCCA AGTCCTTCAT 
    CAAACACAAC TTTAGCAGCA ATATTGGAGA AAGCAAGGGA ACTTGATATC 
    CCCAAAGAAA TCTTGGAGCG CAACATAAAA AGGGCTTCAG AAAAGGGCCA 
    AGATACTTAC ACAGAAAAGG TTTACGAGGT GTATGGTTTT GGTGGAGTAG 
    GTATGGTTGT TGAGGTCCTT ACAGATAAAA TTACAAGATC TATTGCGGAT 
    ATAAGAAATG TTGTAAAGGA CTGTGGAGCA AAATTGGCTG ATCCTGGATC 
    TGTTACATTC AGATTCAGAC AAGCTCGAGT GGTGAACATC AAAGTAACTG 
    ATGCTGATAA GGACCAACTG CTCACTGTTG CTTTGGATGC TGGCGCCGAT 
    GATGTCATTG AACCAAATTT TGATGATGAT GATGATGACG ACGACGACTA 
    CGATGACGAC TCCTCTGAAG ATGTTTCAGA AAGGTTTTAC AAGATAGTTA 
    CTACATCAGA GAACTATCCT GTTGTGCTAT CGAAGCTACA AGAGGAAGGA 
    CTAAAATTTG AAACTGATAA TGGCTATGAA TTGCTGCCTC TGAACCCGAT 
    TGAGGTAGAT GACGAGGCCA TGGAACTAAA CAAGGTCCTA GTGTCTAAGT 
    TGCTTGAGCT TGATGACGTT GATGCTGTCT ATACTGACCA AAGGTGACTC 
    TGAATTCATG ATCCAAGACA CTCGATGCCG ACGGTTCTTG GGTTACACTG 
    TGGATTGGCA GTGGATTGGC AGAAAGCTGG TGGATGGAGC TGCCAATGGA 
    GCCTGTTTAC TTGCAGCCAG TTATATTTTG CCAAAATTGA GTTGATAATA 
    CGGCATTTTT TGTGTAACTA CTTTGCACAC TCGCATCTCA AACAAAGAGT 
    TCTAAAAATT TTCCCTTCC

    Gene models with high sequence identity

    1. AT2G25830.1 [+] show detail - YebC-related
      E-value: 8e-98; Score: 354.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF28 1.2e-72
    Gene3D Integrase, N-terminal zinc-binding domain-like 7.9e-14
    Gene3D no description 8.3e-19
    HAMAP Protein of unknown function DUF28 21.325
    superfamily Protein of unknown function DUF28 4.7e-58
    HMMPanther Protein of unknown function DUF28 1.3e-42

    See the detailed result >

    AT2G25830.1

    Model type
    Protein coding
    Short Description
    YebC-related
    Computational Description
    YebC-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF28 (InterPro:IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro:IPR017856); Has 8692 Blast hits to 8692 proteins in 2830 species: Archae - 0; Bacteria - 6166; Metazoa - 76; Fungi - 120; Plants - 47; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR