K15248

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15248

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15248

Determination of introduced cDNA(s)

  • J033112J01 - Rice Full-length cDNAs - Original: J033112J01

    full reading [+] show sequence

    Nucleotide sequence: J033112J01 - full reading 
    GATCAGGAGG TCAATAGGAG AGAAGAGGAG CGTCGTCGAG TTTGAAATCT 
    CAACTCGCAA ACCCCCACAC TACTTTTTCT TCGTCTATTA TATCCCAACA 
    CAACACAAGG TGAAGCTACT CCTAGGCGAG AGAATCTGAG AGAGATGAGA 
    TGAGAAACCT TCACCCACCA ATGATGAAGA TGCTCCTCGC CGCCCTCGTC 
    GTCGTCGCCG CCGCCTCCTT CAGGGCGGCC GAGGCGGCGC TCCCGTCGAT 
    GGCGGTGGGC GTCAACTACG GCGCCAACGC CGACAACCTC CCTCCGCCCA 
    AGGACGTGGC GGCCTTCCTC GCCGCGCACA CCACCATCGA CCGCGTGAAG 
    CTGTTCGACG CCAACCCGGC CTTCATCTCC GCCTTCGCCA ACACACCCAT 
    CTCCCTCGCC GTCTCCCTCC CCAACTCCGA CCTCCCTTCC CTCGCCGACA 
    AGCAGACCGG CCTCGACACC GCCCGCGCCT GGGTCCGCGC CAACCTCTCC 
    CCCTACGTCC CCGCCACCAA CGTCACCCTC CTCCTCGCCG GCAACGAGAT 
    CCTCCTCTCC CCTGACCCCA ACCTCGTCCT CTCCCTCCTC CCCGCCATGC 
    GCCGCCTCGC CCAGGCCCTC CGCCTCGAGG GCCTCACCGG AGTCCGCGTC 
    ACCACCCCGC ACTACCTCGG CATCCTCGCC CCCTCCGACG GCATCCCATC 
    CAACGCCCGC TTCCGCCCGG GCTACGACAC CAAGCTCTTC CCTCCCATGC 
    TCCAGTTCCA CCGCGACACG GGCTCCCCCT TCATGGTCAA CCCCTACCCC 
    TACTTCAGCT ACAACAATCA GACGCTGGAC TACGCCCTCT TCCGCCCCAA 
    CCGCGGCGTT TACGACCCCA ACACCAAGCT CAACTACACC TCCATGTTCG 
    ACGCCCAGAT GGACGCCATC TACACCGCCA TGAAGCGCCT CGGCTACGGC 
    GACGTCGACA TCGCCGTCGG GGAGGCCGGG TGGCCCACGC AGGCGGACCC 
    AGGGCAGGTG GGCGTCGGCG TGGAGGAGGC CAGGGACTTC AACGAGGGGA 
    TGCTCCGCGT CGTCAGCAGC GGCAAGGGCA CCCCGCTCAT GCCCAACCGC 
    AAGTTCGAGA CCTACATCTT CTCCCTCTTC GACGAGAACC AGAAGCCCGG 
    ACCCATCGCC GAGAAGCACT TCGGCATCCT CAACCCGGAT TTCACCCCCA 
    TCTACGACCT CGGCCTCCTC CGCCAATCCT CCGATTCTGG AGCTCCAAAC 
    CCTTCGCCGA ATCCATCACC TAACCCTAGT CCGAAACCCG CTCCTTCTGG 
    TGGAGGGAAG TGGTGTGTCC CTAAGGCTGG TGCGAGTGAT ACTGACTTGC 
    AGAACAACAT TAACTATGCC TGTGGCTATG TGGACTGTAA GCCGATACAA 
    AGTGGTGGCG CATGCCTTGA TCCGAACAAC GTGCAGTCCC ATGCTGCATT 
    TGTGATGAAT GCCTTCTACC AGGCCAACGG GCGGCACGAC TACGATTGCG 
    ACTTCAAGGG CACCGGCGCG GTCACCTCCA ATGACCCTAG CTACGGGAGC 
    TGCAAATACG TCTCCTGACG GGACGCAGCA AGCCATGGCA GTGCAGGTGC 
    AGCGGCACCA ACCTCGAGTC TACCTCCAGG CTTAAGTCAC GGAAGCGCTG 
    GAGGGTTGCT AATACTGCCT GGCTTGCGCC TAATTTTTCT CTGCTCTTGT 
    CTGACAGCAG CCATGCTTCT TTCTTAGAAG AGCTATACTA TTCATTACTC 
    TCGTAGCACC GGGGAATGAA CCTATTAAAA TTGTGTATCC GTTATCAGTC 
    AATTCTTGCT CATGTTTGGC TATACCGCAG TTTTCTCATT GTGTAGTGAA 
    ATCATTTGTG CTTAACTTAT CATTCC

    Gene models with high sequence identity

    1. AT5G24318.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 4e-122; Score: 435.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 3.8e-44
    PatternScan Glycoside hydrolase, family 17 0
    Gene3D Glycoside hydrolase, subgroup, catalytic core 2.1e-94
    superfamily Glycoside hydrolase, catalytic core 9.1e-91
    HMMPfam Glycoside hydrolase, family 17 3.4e-75
    HMMPfam X8 1.9e-28

    See the detailed result >

    AT5G24318.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 2814 Blast hits to 2741 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2803; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR