K15303

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15303

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: K15303

Determination of introduced cDNA(s)

  • J033024K20 - Rice Full-length cDNAs - Original: J033024K20

    full reading [+] show sequence

    Nucleotide sequence: J033024K20 - full reading 
    GGCCTCACTC CGCCGCCACG TCACCGGATC CCCCACGCCT CGCTTCCCCC 
    ACCGCGTATG CCGCCGCCGG CGAGGAGCCC GGCCGCCGGC GTGCGGAGGC 
    GAGGCGCGCT CCTCCCCCTC GCTTTCCTCC TCCTCCTCCT CCTCCTGCTG 
    CTGCACCTGA CCTCCTCGCC TGCCCGCTCC CCCAACTCCC CGCTGCTCCG 
    CGGCTCCGGC GACGGGGAGC CCCGGCAGCG CGGGCCCTGC GACTACGCGT 
    CCGGCGAGTG GGTTCCCGAC GACGACGATC CCGCGGTGTC CGGCGGCCTG 
    AGGTACGACC AGACGTGCAG GGAGATCTTC AAGGGGTGGA ACTGCCTCGC 
    CAACGGGAAG CGCAACGGCC GGGAGCTGCT CCGATGGCGG TGGAGGCCAC 
    GCGGGTGCGA GCTCCCCAGG CTCGACCCGC TCCGTTTCCT GGAGTGCCAC 
    AGGAACACCA GCATTGGATT TGTGGGTGAT TCATTGAACC GGAATATGTT 
    TGTCTCGTTG GTCTGCATGC TTAGGGGGGC GAGTGGGGAG GTTCGCAAGT 
    GGCGTCCTGC AGGAGCAGAC CGGGGTTTCA CATTCCTGCG CTATAACCTC 
    ACCCTCGCAT ACCACAGGAC TAATCTTTTG GTACGCTATG GTAGGTGGTC 
    AGCCAGTCCA AATGGGGGTC CCCTAGAATC TCTTGGATAC AAGCAAGGCT 
    ACAGAGTAGA CGTTGATATT CCTGACCAAA CATGGGCAGA GGCACCAAGC 
    TTCCATGATG TTCTTATTTT CAACACAGGG CATTGGTGGT GGGCCCCTTC 
    AAAATTTAAT CCAGTACAGT CACCAATGCT ATTCTTTGAG AAGGGGATTC 
    CAGTTATACC TCCTTTATTG CCACCTGCAG GACTGGATTT GGCTCTTAAA 
    CACATGATAA TATTTGTGAA CAAAGCAATG AGACCCAATG GGGTGAAACT 
    CTTCCGCACT CAATCTCCTA GGCATTTTGA AGGTGGTGAC TGGAATGAAG 
    GTGGATCTTG TCAACGTGAC AAGCCCTTGT CTGCAGAAGA GGTTGAGGAA 
    CTTTTCTCTT TGGACAACAA TGGCACAAAC GTAGAAGCAC GCTTGGTAAA 
    CCAGCACTTG GTGAGGGCTC TTGAAAAGTC TACTTTCAAT GTTCTGAATA 
    TAACTGGAAT GAGTGAATTC AGAGCTGATG CTCATCCTTC AACAACTGGT 
    GGGAAGAAGC ATGATGATTG CATGCATTGG TGTTTGCCAG GGCCAACAGA 
    TACATGGAAC GATTTGCTAG CAGCAAATCT ATTGGCGACT GAGAGTTAGT 
    TTGACAAAAC GTTGAGACTC TTTTGCTTGA GAAATTCTCC CGAGATTTTT 
    GTGGGTTGTG AACATGATGA AGCATCGATC GTTGCACAGC ATTGTTTTGA 
    TCAAAGCTTA TTCACGGCAG CTTCTTCATA TAGGCATTAG AGTATTGAGC 
    ATTAGACAAT GTAAAGTTAA CTTCATTTTT GTGTCATTGT GTGTGTGTTT 
    TGGGCGGTGG GTGAGGTACT TCTGTTCAAA TTTGTCCTAG AGTTTGGATA 
    GTGATTCTGT CCATCTGTAA ACTGCTTCCT AAACTACTAA ACGGTGTATA 
    TTTTTGCAAA AAAATTATAT ACGAAAGTTG CTTTG

    Gene models with high sequence identity

    1. AT2G14530.1 [+] show detail - TRICHOME BIREFRINGENCE-LIKE 13
      E-value: 3e-143; Score: 505.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G14530.1

    Model type
    Protein coding
    Short Description
    TRICHOME BIREFRINGENCE-LIKE 13
    Curator Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
    Computational Description
    TRICHOME BIREFRINGENCE-LIKE 13 (TBL13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G64470.2); Has 1334 Blast hits to 1311 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR